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Report for CCDS70236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70236.1 Public Mus musculus 11 Xaf1 23 108 98 CCDS HistoryNCBI Gene:327959Re-query CCDS DB by CCDS ID:70236.1Re-query CCDS DB by GeneID:327959See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140842.8 ENSMUSP00000121472.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140842.8Link to Ensembl Protein Viewer:ENSMUSP00000121472.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000140842Re-query CCDS DB by Protein ID:ENSMUSP00000121472
Original member Current member NCBI NM_001291153.1 NP_001278082.1 Accepted alive Link to Nucleotide Sequence:NM_001291153.1Link to Protein Sequence:NP_001278082.1Re-query CCDS DB by Nucleotide ID:NM_001291153Re-query CCDS DB by Protein ID:NP_001278082Link to BLAST:NP_001278082.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278082.1 178 Q5NBU8-3 178 100% 0 0

Chromosomal Locations for CCDS 70236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72301678 72301709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72303327 72303462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72308607 72308924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72311956 72312006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGGAGGCTGACTTCCAAGTGTGCAGGAACTGCAAAAGAAATGTGGCCTCTCTCCACTTCATGCTCCACG
AGGCCCACTGCCTGCGCTTCATAGTCCTTTGCCCAGAATGTGAAGAGCCCATCCCAGAGTCAAAGATGAA
AGAGCACATGGAAGTTGTGCACCAGCAGAAACAATGTTCCGCCCCAAACACTGTGACACGTATTCGGGAT
GAAAGTATAATAGTCATTCCTTCAACCCTTGCATTTATGGACTCTGGAAATCGAAGATCCACAGTGAGTA
AAGATGTTCGTCCAAAGACAAAAAATAGAAACAGCTCAACAAAGCGAGAGACAAAAAAACAAAATGGCAC
TGTGGCTCTGCCTTTGAAGTCTGGGCTCCAGCAGAGGGCTGATCTTCCCACAGGAGACGAGACGGCCTAT
GACACTCTCCAGAACTGTTGTCAGTGCCGAATTTTACTTCCCTTGCCCATTCTAAATGAGCACCAGGAGA
AGTGCCAGAGGTTAGCTCACCAAAAGAAACTCCAGTGGGGCTGGTGA

Translation (178 aa):
MEADFQVCRNCKRNVASLHFMLHEAHCLRFIVLCPECEEPIPESKMKEHMEVVHQQKQCSAPNTVTRIRD
ESIIVIPSTLAFMDSGNRRSTVSKDVRPKTKNRNSSTKRETKKQNGTVALPLKSGLQQRADLPTGDETAY
DTLQNCCQCRILLPLPILNEHQEKCQRLAHQKKLQWGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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