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Report for CCDS70683.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70683.1 Public Mus musculus 16 Tekt5 23 108 98 CCDS HistoryNCBI Gene:70426Re-query CCDS DB by CCDS ID:70683.1Re-query CCDS DB by GeneID:70426See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70683.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043415.12 ENSMUSP00000046824.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043415.12Link to Ensembl Protein Viewer:ENSMUSP00000046824.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043415Re-query CCDS DB by Protein ID:ENSMUSP00000046824
Original member Current member NCBI NM_001291001.2 NP_001277930.1 Accepted alive Link to Nucleotide Sequence:NM_001291001.2Link to Protein Sequence:NP_001277930.1Re-query CCDS DB by Nucleotide ID:NM_001291001Re-query CCDS DB by Protein ID:NP_001277930Link to BLAST:NP_001277930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277930.1 557 G5E8A8-1 557 100% 0 0

Chromosomal Locations for CCDS 70683.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 10358006 10358435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10361258 10361412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10378897 10379119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10382790 10382933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10386063 10386133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10387155 10387238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 10394853 10395419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1674 nt):
ATGGAATTTCTTGGAACCACTCAGACAGCGAGTTTCTGTGGCCCCAAGAAAGGCTGTGGCTTGCAGGCGC
TGCCCCCTGCTGGGCAGGAACCTGTGGTACAGGAGTGCTACCAACCCTTTCACCTGCCCGGATACCGCTA
CCTGAACGCGTGGAGACCCAGCGTCTTCCACAAGATCGCCACCTCCCAGACAATCCCCGAGGAATGCTCA
GGCATCCGGCGGCCGCCCACCATCCTGCCCTCGCTCCGCTCCGCGCTCTTCTGTCGCTACACCCCAAGGG
ACTGGGACCGCTCCAATGATCTGCAGATCAGGAATGCAGAGGCCTCGCGGCTCTGGGCCAGCCGGCTGAC
AGGCGACTCGCTGCGGATCATGCAGGATAAGGACCAGCTGATACACCAGATGCAGGAGGGAACCTCCCGG
AACTTGGGCCAGAGGCTATCCGACCTCGGTTTCTGGAAGTCCGAGTTGTGCTATGAGCTGGACAGGCTTC
TGACGGAGAACAGCAGCATGGACACCCTCAAGAGGCGCTTGGAGTGCGCTGCTGAGGAGGTGAACTGTCC
CTTGCAGGTGGCCCTGGAGTGTCTGTACAATCGGGAGAAAAGGATCGGGATTGACCTGGTCCATGACAAC
GTGGAGAAAAACCTTATCCGGGAAGTAGATTTACTAAAATGTTGCCAAGATCAGATGAGAAAATTAGCTA
AACGAATTGATTTCCAGATTCGAGATAACCGGGATGCTCAGCACTCCCTAGAGCGGGATATTGAAGACAA
GAGCTCTGCACAGTATATTGACGAGAATTGTTTTAACCTAAGAAGCACGTCTGACTCCATCAGCTTCTTC
CACGGCGTGGAGAAGTTTGACGGAACGGTCTCCATTCCTGAAACCTGGGCCAAGTTCAGCAATGACAACA
TCAGACATGCTCAGAACATGCGGGCTAACTCCATCCGGCTGCGGGAAGAGGCAGAGCACCTGTTTGAGAC
CTTGTCGGACCAGATGTGGAAGCAGTTCACCAACACCAACCTAGCCTTCAACGCTCGCATCTCTGAGGAG
ACAGATGTGAAGAACAAGCTGCAGACACAGCTGGCTAAGATACTGCAGGAGATCTTCCAGGCAGAAAACA
CCATCATGTTGCTGGAGAGGGCCATTGTGGCCAAGGAATACCCACTGAAGATGGCCCAGACCATGCTAGC
ATGCAGGACCCGACGGCCCAATGTGGAACTCTGCAGGGATGTGCCACAGTTCAGGCTCGTGAATGAGGTC
TTCACCATAGACGACACTCTACAGACGCTCAAGCTGAGGCTTCGGGAGACGCAAGACACGTTGCAGCTGC
TGGTGATGACCAAGTCCCGTCTGGAGCACGAGCTGGCCATCAAAGCCAACACCTTGTGTATTGACAAGGA
CAAATGCATGAGCATGCGCAAATCCTTCCCCAGCACACCCCGCCTGACTGGCTACACCTGCTCTGCCATC
GGTTCAGGCCCTTACGCCAACCACGCCCCTCGTATCAGCTCCGGCCCCTGCAGCGGCTCAGCGCTTTGTA
AAGGCCCCGCCTCGTGTGGGGGCGGGGCCTCTTGTGGAGGAGGGGCCTCTTGCGGGGGTCACGCCCCTTG
TGGCTCCGCGCTTTGTTCCCACTCTGTGTCCCGTTCAGGCCCTGGCTTTGCACCGGTGTGTTAA

Translation (557 aa):
MEFLGTTQTASFCGPKKGCGLQALPPAGQEPVVQECYQPFHLPGYRYLNAWRPSVFHKIATSQTIPEECS
GIRRPPTILPSLRSALFCRYTPRDWDRSNDLQIRNAEASRLWASRLTGDSLRIMQDKDQLIHQMQEGTSR
NLGQRLSDLGFWKSELCYELDRLLTENSSMDTLKRRLECAAEEVNCPLQVALECLYNREKRIGIDLVHDN
VEKNLIREVDLLKCCQDQMRKLAKRIDFQIRDNRDAQHSLERDIEDKSSAQYIDENCFNLRSTSDSISFF
HGVEKFDGTVSIPETWAKFSNDNIRHAQNMRANSIRLREEAEHLFETLSDQMWKQFTNTNLAFNARISEE
TDVKNKLQTQLAKILQEIFQAENTIMLLERAIVAKEYPLKMAQTMLACRTRRPNVELCRDVPQFRLVNEV
FTIDDTLQTLKLRLRETQDTLQLLVMTKSRLEHELAIKANTLCIDKDKCMSMRKSFPSTPRLTGYTCSAI
GSGPYANHAPRISSGPCSGSALCKGPASCGGGASCGGGASCGGHAPCGSALCSHSVSRSGPGFAPVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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