NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70772.1 Public Mus musculus 17 Haghl 23 108 98 CCDS HistoryNCBI Gene:68977Re-query CCDS DB by CCDS ID:70772.1Re-query CCDS DB by GeneID:68977See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70772.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000138759.7 ENSMUSP00000115538.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000138759.7Link to Ensembl Protein Viewer:ENSMUSP00000115538.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000138759Re-query CCDS DB by Protein ID:ENSMUSP00000115538
Original member Current member EBI ENSMUST00000133071.7 ENSMUSP00000120885.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133071.7Link to Ensembl Protein Viewer:ENSMUSP00000120885.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133071Re-query CCDS DB by Protein ID:ENSMUSP00000120885
Original member Current member NCBI NM_001271436.1 NP_001258365.1 Accepted alive Link to Nucleotide Sequence:NM_001271436.1Link to Protein Sequence:NP_001258365.1Re-query CCDS DB by Nucleotide ID:NM_001271436Re-query CCDS DB by Protein ID:NP_001258365Link to BLAST:NP_001258365.1
Original member Current member NCBI NM_001271437.1 NP_001258366.1 Accepted alive Link to Nucleotide Sequence:NM_001271437.1Link to Protein Sequence:NP_001258366.1Re-query CCDS DB by Nucleotide ID:NM_001271437Re-query CCDS DB by Protein ID:NP_001258366Link to BLAST:NP_001258366.1

Chromosomal Locations for CCDS 70772.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25783010 25783178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25783503 25783582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25783785 25783886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784075 25784178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784260 25784368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784455 25784572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25784661 25784686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGGTGCTGTCCACCCATCATCACTGGGACCACACACGTGGAAATGCGGAGCTGGCACACATTCTGCCAG
GATTGGCTGTCTTGGGAGCAGATGAGCGCATTTGCGCTCTAACCCGAAGGCTGGAACATGGAGAAGGGCT
TCAGTTTGGGGCCATCCACGTGCGATGCCTCTTGACGCCAGGCCACACCTCTGGCCACATGAGCTACTTC
CTGTGGGAGGATGACTGCCCGGACTCACCAGCCCTCTTCTCTGGGGATGCTCTGTCAGTGGCAGGCTGTG
GCTGGCACCTGGAGGACACTGCCCAGCAGATGTACCAGAGCTTGGCCAAGACTCTGGGTACCCTTCCACC
CGAGACGAAGGTGTTCTGTGGTCATGAGCATACGCTGAGCAATCTTGAGTTTGCACAGAAAGTGGAGCCC
TGCAACGAACACGTGCAAGCTAAGCTGTCCTGGGCCCAGGAGAGGGATGACGAGGATATTCCTACTGTGC
CTTCGACGCTGGGCGAGGAGCTCATGTACAACCCTTTCCTGAGGGTGACAGAGGATGCAGTCCGTGCGTT
CACAGGCCAGGTGGCCCCAGCCCAGGTCCTGGAGGCCCTCTGCAGGGAGCGAGCGCGCTTCCAGCCTGCT
GTGGAGCCACCACAGCCGCAGGTTCGGGCACTCCTGGCCTTACAGTGGGGGCTTCTGAGCACACACCAGA
AAAAGTGA

Translation (235 aa):
MVLSTHHHWDHTRGNAELAHILPGLAVLGADERICALTRRLEHGEGLQFGAIHVRCLLTPGHTSGHMSYF
LWEDDCPDSPALFSGDALSVAGCGWHLEDTAQQMYQSLAKTLGTLPPETKVFCGHEHTLSNLEFAQKVEP
CNEHVQAKLSWAQERDDEDIPTVPSTLGEELMYNPFLRVTEDAVRAFTGQVAPAQVLEALCRERARFQPA
VEPPQPQVRALLALQWGLLSTHQKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH