NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS70924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70924.1 Public Mus musculus 19 Bad 23 108 98 CCDS HistoryNCBI Gene:12015Re-query CCDS DB by CCDS ID:70924.1Re-query CCDS DB by GeneID:12015See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113423.9 ENSMUSP00000109050.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113423.9Link to Ensembl Protein Viewer:ENSMUSP00000109050.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113423Re-query CCDS DB by Protein ID:ENSMUSP00000109050
Original member Current member EBI ENSMUST00000235240.1 ENSMUSP00000157664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235240.1Link to Ensembl Protein Viewer:ENSMUSP00000157664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235240Re-query CCDS DB by Protein ID:ENSMUSP00000157664
Original member Current member EBI ENSMUST00000238184.1 ENSMUSP00000158059.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238184.1Link to Ensembl Protein Viewer:ENSMUSP00000158059.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238184Re-query CCDS DB by Protein ID:ENSMUSP00000158059
Original member Current member NCBI NM_001285453.1 NP_001272382.1 Accepted alive Link to Nucleotide Sequence:NM_001285453.1Link to Protein Sequence:NP_001272382.1Re-query CCDS DB by Nucleotide ID:NM_001285453Re-query CCDS DB by Protein ID:NP_001272382Link to BLAST:NP_001272382.1

Chromosomal Locations for CCDS 70924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6942875 6943046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6950640 6950830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6951399 6951524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (489 nt):
ATGTTCCAGATCCCAGAGTTTGAGCCGAGTGAGCAGGAAGACGCTAGTGCTACAGATAGGGGCCTGGGCC
CTAGCCTCACTGAGGACCAGCCAGGTCCCTACCTGGCCCCAGGTCTCCTGGGGAGCAACATTCATCAGCA
GGGACGGGCAGCCACCAACAGTCATCATGGAGGCGCAGGGGCTATGGAGACTCGGAGTCGCCACAGTTCG
TACCCAGCGGGGACCGAGGAGGATGAAGGGATGGAGGAGGAGCTTAGCCCTTTTCGAGGACGCTCGCGTT
CGGCTCCCCCCAATCTCTGGGCAGCGCAGCGCTACGGCCGTGAGCTCCGAAGGATGAGCGATGAGTTTGA
GGGTTCCTTCAAGGGACTTCCTCGCCCAAAGAGCGCAGGCACTGCAACACAGATGCGACAAAGCGCCGGC
TGGACGCGCATTATCCAGTCCTGGTGGGATCGAAACTTGGGCAAAGGAGGCTCCACCCCCTCCCAGTGA

Translation (162 aa):
MFQIPEFEPSEQEDASATDRGLGPSLTEDQPGPYLAPGLLGSNIHQQGRAATNSHHGGAGAMETRSRHSS
YPAGTEEDEGMEEELSPFRGRSRSAPPNLWAAQRYGRELRRMSDEFEGSFKGLPRPKSAGTATQMRQSAG
WTRIIQSWWDRNLGKGGSTPSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH