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Report for CCDS71081.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71081.1 Public Mus musculus 2 Ppp1r1c 23 108 98 CCDS HistoryNCBI Gene:75276Re-query CCDS DB by CCDS ID:71081.1Re-query CCDS DB by GeneID:75276See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71081.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111780.2 ENSMUSP00000107410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111780.2Link to Ensembl Protein Viewer:ENSMUSP00000107410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111780Re-query CCDS DB by Protein ID:ENSMUSP00000107410
Original member Current member NCBI NM_001290743.1 NP_001277672.1 Accepted alive Link to Nucleotide Sequence:NM_001290743.1Link to Protein Sequence:NP_001277672.1Re-query CCDS DB by Nucleotide ID:NM_001290743Re-query CCDS DB by Protein ID:NP_001277672Link to BLAST:NP_001277672.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277672.1 91 Q8BKK4-3 91 100% 0 0

Chromosomal Locations for CCDS 71081.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79708174 79708254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79709899 79709959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79756454 79756488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79759611 79759671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79815375 79815412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (276 nt):
ATGGAGCCCAATAGCCCCAAAAAGATACAATTTGCTGTGCCTTTATTCCAGAGTCAGATTGCCCCAGAGG
CAGCAGAGCAGATCAGGAAAAGAAGACCTACACCAGCATCCCTTGTGATTCTCAATGAACATAATTCCCC
AGAAATTGATGAGAAGAGAGTGACTAACACACAAGAATCGCAGAATGCATCGCCTAAGCAAAGGAAGCAG
AGTGTGTACACACCACCGGCCATGAAAGGAGCAAGCAACCAAGAAGAAAAGAAGAGATGGGAGTAG

Translation (91 aa):
MEPNSPKKIQFAVPLFQSQIAPEAAEQIRKRRPTPASLVILNEHNSPEIDEKRVTNTQESQNASPKQRKQ
SVYTPPAMKGASNQEEKKRWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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