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Report for CCDS71291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71291.1 Public Mus musculus 3 Ctss 23 108 98 CCDS HistoryNCBI Gene:13040Re-query CCDS DB by CCDS ID:71291.1Re-query CCDS DB by GeneID:13040See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 71291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015667.8 ENSMUSP00000015667.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015667.8Link to Ensembl Protein Viewer:ENSMUSP00000015667.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015667Re-query CCDS DB by Protein ID:ENSMUSP00000015667
Original member Current member NCBI NM_001267695.2 NP_001254624.2 Accepted alive Link to Nucleotide Sequence:NM_001267695.2Link to Protein Sequence:NP_001254624.2Re-query CCDS DB by Nucleotide ID:NM_001267695Re-query CCDS DB by Protein ID:NP_001254624Link to BLAST:NP_001254624.2

Chromosomal Locations for CCDS 71291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95526900 95526925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95529434 95529560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95538721 95538843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95543013 95543162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95545333 95545563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95546796 95546961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95550053 95550155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95556086 95556185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGAGGGCTCCTGGCCACGCTGCCATCAGAAGATGGCTGTTTTGGATGCCCCTGGTGTGCTCTGTGGCAA
TGGAGCAACTGCAGAGAGACCCTACCCTGGACTACCATTGGGATCTCTGGAAGAAAACCCATGAGAAAGA
ATACAAGGATAAGAATGAAGAAGAAGTACGGCGTCTCATCTGGGAAAAGAATCTGAAGTTTATAATGATT
CACAATCTCGAATATTCTATGGGAATGCATACCTACCAAGTGGGCATGAACGATATGGGAGACATGACCA
ATGAAGAAATCTTGTGTCGGATGGGTGCTCTGAGAATTCCCCGACAGTCTCCGAAGACTGTCACTTTCAG
GTCATACTCTAATCGGACATTGCCTGACACTGTGGACTGGAGAGAGAAGGGCTGCGTCACTGAGGTGAAA
TACCAGGGTTCTTGTGGTGCCTGCTGGGCTTTCAGTGCTGTGGGGGCCCTTGAAGGGCAGCTGAAGCTGA
AAACGGGGAAGCTGATATCCCTCAGTGCTCAGAACCTGGTGGACTGCTCAAATGAAGAAAAGTATGGGAA
TAAAGGCTGTGGAGGCGGCTACATGACCGAAGCTTTCCAGTACATCATTGATAATGGGGGCATAGAGGCA
GACGCTTCCTATCCCTACAAAGCCACGGATGAAAAGTGTCACTATAACTCAAAAAATCGAGCTGCCACGT
GTTCAAGGTACATTCAGCTCCCGTTTGGTGACGAGGATGCCCTGAAAGAAGCAGTGGCCACTAAAGGGCC
TGTCTCTGTGGGCATCGACGCCAGCCATTCCTCCTTCTTCTTCTACAAAAGCGGTGTCTATGACGACCCC
TCCTGTACGGGCAATGTGAATCATGGTGTTCTTGTGGTTGGCTATGGGACTCTTGATGGCAAAGATTACT
GGCTTGTGAAAAACAGTTGGGGCCTTAACTTTGGTGATCAAGGATACATTCGGATGGCAAGAAATAATAA
AAATCACTGCGGAATTGCTAGTTATTGCTCTTACCCAGAAATCTAA

Translation (341 aa):
MRAPGHAAIRRWLFWMPLVCSVAMEQLQRDPTLDYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMI
HNLEYSMGMHTYQVGMNDMGDMTNEEILCRMGALRIPRQSPKTVTFRSYSNRTLPDTVDWREKGCVTEVK
YQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEA
DASYPYKATDEKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDP
SCTGNVNHGVLVVGYGTLDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCSYPEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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