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Report for CCDS71359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71359.1 Public Mus musculus 4 Nfx1 23 108 98 CCDS HistoryNCBI Gene:74164Re-query CCDS DB by CCDS ID:71359.1Re-query CCDS DB by GeneID:74164See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71359.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091614.6 ENSMUSP00000089203.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091614.6Link to Ensembl Protein Viewer:ENSMUSP00000089203.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091614Re-query CCDS DB by Protein ID:ENSMUSP00000089203
Original member Current member NCBI NM_001290449.1 NP_001277378.1 Accepted alive Link to Nucleotide Sequence:NM_001290449.1Link to Protein Sequence:NP_001277378.1Re-query CCDS DB by Nucleotide ID:NM_001290449Re-query CCDS DB by Protein ID:NP_001277378Link to BLAST:NP_001277378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277378.1 804 B1AY10-2 804 100% 0 0

Chromosomal Locations for CCDS 71359.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40971035 40971059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40976353 40977342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40984893 40985051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40986693 40986770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40988622 40988727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40990793 40990864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40991744 40991883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40993759 40993858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40993963 40994180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40996815 40996912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40999685 40999715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41003018 41003097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41004328 41004436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41004826 41004945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41009190 41009269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41011527 41011535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGGCGGAGGCGCCTCCGGTCTCAGGCACTTTTAAATTCAATACAGATGCTGCTGAGTTCATTCCTCAGG
AGAGAAAAACTTCTGGTCTAAATTGTGGGACCCAAAGAAGACTAGATTCTAGTAGGATTGGCAGAAGAAA
TTATAGTTCCTCGCCTCCCTGTCACCTTCCTAGACACATCCCTTATGAAGACATCTCTGCTGTTCATCAG
CACAGTTATGCCTCTGGAAGCAAACCTAAGAGTCCCCAGGGTTTTTTCCAGTCATCTAATAAATCACTCA
AGAACCATGGCCTTCAGAATCAGCCATGGCAGAAAGCAAGGAATGAAAAGCACCAAAACAGAAACAAGAA
AGCACAAGGGCTCTCTGAGCAGACGTCAGATACATCTAGTTTAGAAAGTGTAGCCAGGTCAGAGAGTGGA
ACAAACCCGAGAGAGCACAGCCCTTCCGAGAGTGAGAAGGAGGTGGTTATCGCAGATCCCAGGGGAGCGA
AACCCAAAAAAGCAGCACAGCTTACATACAACTATGGCAGAGGACCAAAGGCCAAAGGGAGACTCAGAAG
CGAGTGGGGTAATAGAATGAGCCCAAAGTCTGAGGACGAAAATACCAGACCCGTGGCGATTTCCCACACT
GACTCTTCAGATGCCTCCTGTAGAAAACCTGTAGTGGATCCATGTGTGTGCAGGCGGAATGAGCAGAGAA
GATATCCCCAGAAAAGGCCTCCCTGGGAAGTGGAAGGGGCCAGACCACGGCCAGGCAGGAACCCACCAAA
ACAGGAGAGTCAGCGGCATATAAATGCAGGGCCCAAAACCAACATGTCCCCCATTCCAAAGGATAATCTT
AGAGAAAGACCAACGAAGTCAGCCTGTGACACTGGGAATTTGGCAGTTGTCAGCAAGTCTTCGAGAAGGG
TTAACCAAGAGAAAACTGCTGTAAGGAGACAGGATCCCCAAGTGCTATCTCCTTTTCCCAGAGGCAAACA
GAACCATATGCTGAAGAATGTGGAAACACATACAGGTTCCCTGATTGAGCAGCTAACTACAGAAAAATAC
GAGTGTATGGTATGCTGTGAGTTGGTTCAGGTCACAGCCCCGGTGTGGAGCTGTCAGAGCTGTTTTCATG
TCTTTCATCTGAACTGCATCAAGAAGTGGGCACGCTCTCCAGCATCGCATGCAGATGGCCAGAGTGGTTG
GAGGTGCCCTGCTTGTCAGAATGTTTCTGCACATGTTCCCAATACCTATACTTGTTTCTGTGGCAAAGTA
AAGAATCCTGAATGGAGCAGAAATGAAATTCCACATAGTTGTGGTGAGGTTTGTAGAAAGAAACAGCCTG
GCCAGGACTGTCCACATTCCTGTAACCTTCTCTGCCATCCTGGACCCTGCCCACCCTGCCCTGCTTTTAC
AACTAAAACATGTGAATGTGGACGGACCAGGCACACGGTTCGCTGTGGTCAGCCTGTCTCAGTCCACTGT
TCTAATGCATGTGAGAATATCTTGAACTGTGGTCAGCACCACTGTGCTGAGCTGTGCCATGGGGGTCAAT
GCCAGCCTTGTCGGATCATACTGAACCAGGTGTGCTACTGTGGCAGCACCTCCCGAGATGTGTTGTGTGG
AACCGATGTGGGAAAGTCTGATGGATTTGGGGACTTCAGCTGTTTAAAGATATGTGGCAAGGACTTGAAG
TGTGGGAGCCATACCTGTTCTCAGGTTTGCCACCCTCAGCCGTGTCAGCCTTGCCCACGGCTCCCCCATT
TGGTGCGATACTGCCCTTGCGGCCAAACACCTCTCAGCCAGTTGCTGGAACATGGAAGTAATGCTCGGAA
AACATGCATGGATCCTGTCCCTTCCTGTGGAAAAGTGTGTGGCAAACCCTTGGCCTGTGGTTCCTCAGAT
TTCATCCACACCTGTGAAAAGCTTTGCCATGAAGGAGACTGTGGGCCGTGCTCTCGCACATCAGTCATTT
CCTGCAGATGCTCCTTCAGAACAAAGGAACTTCCGTGTACCAGTCTTAAAAGTGAAGATGCTACATTTAT
GTGCGACAAACGGTGTAACAAGAAACGATTGTGCGGACGGCATAAATGTAACGAGATCTGCTGTGTGGAC
AAGGAGCACAAGTGTCCTTTGATTTGTGGGAGGAAACTCCGCTGTGGCCTTCATCGGTGTGAAGAACCTT
GTCATCGAGGGAACTGTCAGACCTGCTGGCAAGCCAGCTTTGATGAATTAACCTGCCACTGTGGCGCCTC
TGTGATCTACCCACCAGTTCCCTGTGGGACTAGGCCTCCTGAGTGTACCCAAACCTGTGCCAGGATCCAT
GAATGTGACCATCCAGTATATCATTCTTGTCATAGCGAGGAGAAGTGTCCCCCTTGTACTTTCCTAACTC
AGAAGTGGTGCATGGGCAAGCATGAGAGACAATAG

Translation (804 aa):
MAEAPPVSGTFKFNTDAAEFIPQERKTSGLNCGTQRRLDSSRIGRRNYSSSPPCHLPRHIPYEDISAVHQ
HSYASGSKPKSPQGFFQSSNKSLKNHGLQNQPWQKARNEKHQNRNKKAQGLSEQTSDTSSLESVARSESG
TNPREHSPSESEKEVVIADPRGAKPKKAAQLTYNYGRGPKAKGRLRSEWGNRMSPKSEDENTRPVAISHT
DSSDASCRKPVVDPCVCRRNEQRRYPQKRPPWEVEGARPRPGRNPPKQESQRHINAGPKTNMSPIPKDNL
RERPTKSACDTGNLAVVSKSSRRVNQEKTAVRRQDPQVLSPFPRGKQNHMLKNVETHTGSLIEQLTTEKY
ECMVCCELVQVTAPVWSCQSCFHVFHLNCIKKWARSPASHADGQSGWRCPACQNVSAHVPNTYTCFCGKV
KNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFTTKTCECGRTRHTVRCGQPVSVHC
SNACENILNCGQHHCAELCHGGQCQPCRIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFSCLKICGKDLK
CGSHTCSQVCHPQPCQPCPRLPHLVRYCPCGQTPLSQLLEHGSNARKTCMDPVPSCGKVCGKPLACGSSD
FIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVD
KEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARIH
ECDHPVYHSCHSEEKCPPCTFLTQKWCMGKHERQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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