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Report for CCDS71376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71376.1 Public Mus musculus 4 Spag8 23 108 98 CCDS HistoryNCBI Gene:433700Re-query CCDS DB by CCDS ID:71376.1Re-query CCDS DB by GeneID:433700See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084646.10 ENSMUSP00000081696.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084646.10Link to Ensembl Protein Viewer:ENSMUSP00000081696.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084646Re-query CCDS DB by Protein ID:ENSMUSP00000081696
Original member Current member NCBI NM_001290462.2 NP_001277391.1 Accepted alive Link to Nucleotide Sequence:NM_001290462.2Link to Protein Sequence:NP_001277391.1Re-query CCDS DB by Nucleotide ID:NM_001290462Re-query CCDS DB by Protein ID:NP_001277391Link to BLAST:NP_001277391.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277391.1 470 Q3V0Q6-1 470 100% 0 0

Chromosomal Locations for CCDS 71376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 43651460 43651654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43651747 43651809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43651928 43652042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43652117 43652162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43652345 43652519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43652641 43653421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 43653504 43653541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGGAGACCACCGAGTCTACAGAGGGGTCTTTGTCGCGATCTTGTGATGTACAGCCCAGCTCCGAAAGAC
TAGATACCCCTTCAGAACCTGTTCCTTCTTCGAGTAGTAGTCCTAGGTCTACTGCCCCTGCCGAGGCTCC
GGCGCAGTACTCTGTGCTGACAGAGCCCTCTTCTGACAGTCTTTACGGGGCACCCTGCCCTCCAGCCCAT
CATAGAGGCCATGGGTTTGGCTTTCAGCCCTTCTATGTTTCTTGTATTCCTCAGGATCCCTGTAATATGG
CAGACCTCAGCTCCAGGGCTGATCCTACCTCTTCTTATCCTTGTCATAGCTCTGTGCATGGCTCTGGCTC
TGGCACTTGTGGTCTTGGCCAGAGCTCTGAGCCTAGCCAGGGCTCCGGGCCCACCTCTGGGCCTGCTCCT
GCCTCTGTACCTAGTCTTGTCTCTGGACCTGATTCTGCCTCTGGACCTGATTCTTCTGCCTCGGGACCTG
CTCTTGCCTCTGGACCTGGTCCTGCTGACCCTGGACAGGGTCCTAAGTTCAGCACCTGCATTCCTCAAGG
GTACAGATGCATCCCAGTTGACCTGGCCCCTGATTATAATGCATGGTGTCAGCACTTACACTGGAAGCCA
CAACGCTCCTGGGAACCTCTGCAAGTCTCAGAACCTGGAGTGAGAGGGCCATATAAACCTCCAGAACCTG
GAGCACTCGGGCCATGTGAGCCATGTGAGCCATGTGAACCTCCAGAGGCTGAATCTGAGGAAACTCTCTG
TAAAGCACGGCCACGTGGCCAGTGCCTCCTCTACAACTGGGAGGAAGAGAGAGCCACCAACCAGCTGGAT
CAAATCCCTCCATTGCAAGATGGCTCTGAGAGTTACTTCTTCCGACACGGACACCAGGGTCTGCTGACCA
CGCAGCCCCAGTCACCCATGTCTTCTAGCACCACCCAGAGAGACTCATACCAGCTCCCAAGACACATCTG
TCAGCCACTTCGAGGGAAGCGTGAAGCCATGCTGGAGATGCTCCTGCGACACCAGATCTGTAAAGAGGTG
CAGGCAGAGCAGGAACCTGCAAGGAAGCTCTTTGAGACCGAGTCGGTAACACACCATGACTACAGAGTGG
AGCTGGTACGAGCAGCGCCTCCTGCCTCAACAAAGCCTCATGATTACCGCCAGGAGCAGCCTGAAACCTT
CTGGATTCAGCGGGCAGCACGGCTACCGGGTGTCAGTGACATCAGGACACTGGACACACCATTCCGGAAG
AACTGCAGCTTCTCGACGCCCGTGCCCTTGTCGCTGGGGCAGCCCTTGCCTTACGAGCTTGAGAGCGGCC
CCCACCAAGTGGGGGTAATATCTTCCCTTGCCTGTCAGGGAGGAGGGCAGGGGTGTGGAAGGACGAAAAC
AACTCCAATCTAA

Translation (470 aa):
METTESTEGSLSRSCDVQPSSERLDTPSEPVPSSSSSPRSTAPAEAPAQYSVLTEPSSDSLYGAPCPPAH
HRGHGFGFQPFYVSCIPQDPCNMADLSSRADPTSSYPCHSSVHGSGSGTCGLGQSSEPSQGSGPTSGPAP
ASVPSLVSGPDSASGPDSSASGPALASGPGPADPGQGPKFSTCIPQGYRCIPVDLAPDYNAWCQHLHWKP
QRSWEPLQVSEPGVRGPYKPPEPGALGPCEPCEPCEPPEAESEETLCKARPRGQCLLYNWEEERATNQLD
QIPPLQDGSESYFFRHGHQGLLTTQPQSPMSSSTTQRDSYQLPRHICQPLRGKREAMLEMLLRHQICKEV
QAEQEPARKLFETESVTHHDYRVELVRAAPPASTKPHDYRQEQPETFWIQRAARLPGVSDIRTLDTPFRK
NCSFSTPVPLSLGQPLPYELESGPHQVGVISSLACQGGGQGCGRTKTTPI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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