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Report for CCDS71441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71441.1 Public Mus musculus 4 Calr4 23 108 98 CCDS HistoryNCBI Gene:108802Re-query CCDS DB by CCDS ID:71441.1Re-query CCDS DB by GeneID:108802See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106628.7 ENSMUSP00000102239.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106628.7Link to Ensembl Protein Viewer:ENSMUSP00000102239.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106628Re-query CCDS DB by Protein ID:ENSMUSP00000102239
Original member Current member EBI ENSMUST00000106629.7 ENSMUSP00000102240.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106629.7Link to Ensembl Protein Viewer:ENSMUSP00000102240.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106629Re-query CCDS DB by Protein ID:ENSMUSP00000102240
Original member Current member EBI ENSMUST00000106631.8 ENSMUSP00000102242.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106631.8Link to Ensembl Protein Viewer:ENSMUSP00000102242.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106631Re-query CCDS DB by Protein ID:ENSMUSP00000102242
Original member Current member NCBI NM_001285896.1 NP_001272825.1 Accepted alive Link to Nucleotide Sequence:NM_001285896.1Link to Protein Sequence:NP_001272825.1Re-query CCDS DB by Nucleotide ID:NM_001285896Re-query CCDS DB by Protein ID:NP_001272825Link to BLAST:NP_001272825.1
Original member Current member NCBI NM_001285897.1 NP_001272826.1 Accepted alive Link to Nucleotide Sequence:NM_001285897.1Link to Protein Sequence:NP_001272826.1Re-query CCDS DB by Nucleotide ID:NM_001285897Re-query CCDS DB by Protein ID:NP_001272826Link to BLAST:NP_001272826.1
Original member Current member NCBI NM_001285898.1 NP_001272827.1 Accepted alive Link to Nucleotide Sequence:NM_001285898.1Link to Protein Sequence:NP_001272827.1Re-query CCDS DB by Nucleotide ID:NM_001285898Re-query CCDS DB by Protein ID:NP_001272827Link to BLAST:NP_001272827.1

Chromosomal Locations for CCDS 71441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109238948 109238981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109242157 109242251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109244052 109244261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109244689 109244802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109246148 109246291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109251327 109251419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109253750 109254001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCACTCAGAATCCCAGTATTACATCATGTTCGGCCCGGACATCTGTGGCTTTGGCAACAACAGACTAC
AGGTCATCCTTTCTCACAAAGGGAAATACCATGAGAACAACAAGACCCTCAAGTGCAGGATTAATAAAGA
CACTCACCTGTACACTCTGATCCTTCGCCCTAATGCTACTTATGAGGTTAAAATTGACAACCAGAAGGTG
ACAAGTGGAGGACTGGAAGATGACTGGGACTTCTTGCCTCCCAAGAAAATAAAAGACCCCTACGCCAGGA
AACCAAGGAAATGGGATGAACGACAACAGATAGAGGATCCTGACGATAAGAAACCTGAGGACTGGGAGGA
CTCTGAATTCATCCCAGACCCGGATGCCAAGAAGCCAGATGACTGGAATGAGGCGATGGATGGAGTGTGG
GAAGGGCCCTTGATACCAAACGTCAAGTACATGGGAGAATGGAAACCTCGGATCATTGACAACCCCAATT
ACCAGGGCGAGTGGATTCACCCAGAGATAGACAACCCCAAATACAGGCCTGACCCCACCATTGGTCACTA
TCACAACATTAGTGTCCTTGGTCTGGATCTTTGGCAGGTGAAATCAGGCAGCATCTTTGACAATTTCCTT
CTAACAAATGATGAAGAGTTTGCTGAAGAGGTTGGAAATATGACCTGGGGATTAAGAAAGGATGTGGAGC
AGCAGTGGAGAGAGCTGTATGAGGAAATGGAGAAACAGAAGGAGGCGGAGGAGACCAAGAAGAAGAGGGA
AAAGGAGAGAGCCAGGCAAGAGGACGTCTGGGGACTAGATGAGGAGGATGAGGAGGACGCTGAAGAGGAC
GACGAGGAGGAAGCAGAGGAAAGGCTCAAGCAGGAAGGCAGTGCAGCGAGGGCGTCTCTGGACCAGAAGG
AAGCCCACTTGGATCAGAAGGATGAACTGTAA

Translation (313 aa):
MHSESQYYIMFGPDICGFGNNRLQVILSHKGKYHENNKTLKCRINKDTHLYTLILRPNATYEVKIDNQKV
TSGGLEDDWDFLPPKKIKDPYARKPRKWDERQQIEDPDDKKPEDWEDSEFIPDPDAKKPDDWNEAMDGVW
EGPLIPNVKYMGEWKPRIIDNPNYQGEWIHPEIDNPKYRPDPTIGHYHNISVLGLDLWQVKSGSIFDNFL
LTNDEEFAEEVGNMTWGLRKDVEQQWRELYEEMEKQKEAEETKKKREKERARQEDVWGLDEEDEEDAEED
DEEEAEERLKQEGSAARASLDQKEAHLDQKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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