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Report for CCDS71454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71454.1 Public Mus musculus 4 Tmem53 23 108 98 CCDS HistoryNCBI Gene:68777Re-query CCDS DB by CCDS ID:71454.1Re-query CCDS DB by GeneID:68777See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106433.1 ENSMUSP00000102041.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106433.1Link to Ensembl Protein Viewer:ENSMUSP00000102041.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106433Re-query CCDS DB by Protein ID:ENSMUSP00000102041
Original member Current member NCBI NM_001285814.1 NP_001272743.1 Accepted alive Link to Nucleotide Sequence:NM_001285814.1Link to Protein Sequence:NP_001272743.1Re-query CCDS DB by Nucleotide ID:NM_001285814Re-query CCDS DB by Protein ID:NP_001272743Link to BLAST:NP_001272743.1
Original member Current member NCBI NM_029589.1 NP_083865.1 Accepted alive Link to Nucleotide Sequence:NM_029589.1Link to Protein Sequence:NP_083865.1Re-query CCDS DB by Nucleotide ID:NM_029589Re-query CCDS DB by Protein ID:NP_083865Link to BLAST:NP_083865.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272743.1 261 Q9D0Z3-3 261 100% 0 0
NP_083865.1 261 Q9D0Z3-3 261 100% 0 0

Chromosomal Locations for CCDS 71454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117252698 117252713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117265860 117265975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117267890 117268543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGAATCCTGATGGAAAGAACAGACAAGGTGGGAAGGAAGCTGGGAAGCAACAGCCTGTGGTGATTCTCT
TGGGCTGGGGAGGCTGCAGGGACAAGAACCTGGCCAAGTATAGTGCTATCTACCACAAAAGGGGCTGCAT
TGTGATCCGATACACGGCCCCCTGGCACATGGTCTTCTTCTCTGAGTCCTTGGGCATCCCTTCACTTCGC
GTGATAGCCCAGAAACTGCTGGAGCTCCTCTTTGACTATGAGATTGAGCGGGAGCCTCTGCTCTTCCACG
TCTTCAGCAATGCCGGCGTCATGCTCTACCGCTACGTGCTGGAGCTCCTACAGACCCACCAGCGCTTCCG
CCATTTGCATGTGGTGGGCACCATCTTTGACAGTGGTCCTGGCGATAGCAACCTGATAGGGGCCCTGAGG
GCTCTGGCAACCATCCTGGAGCGCCGACCTGCGGTGCTGCGCCTGTTGCTCCTGGCAGCATTTGCCCTGG
TGGTGATCCTGTTTCACTTCCTGCTTGCTCCATTCACTGCCCTCTTCCACACCCACTTCTACGACAGGCT
GCAGGACTCAGGCTCCTGCTGGCCTGAACTCTACCTCTACTCTAGAGCTGATAAGGTGGTCTCGGCCAGG
GATGTGGAACGTATGGTAGAGGCACGCCTGGCTCACCAGGTCATGGTGCGTGGAGTGGACTTTGTGTCAT
CTGCGCATGTCAGCCACCTCCGAGACTATCCTACTTACTATACAAGTCTGTGTGTTGACTTCATGCATAA
TTGTGTCCAATGCTGA

Translation (261 aa):
MNPDGKNRQGGKEAGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLR
VIAQKLLELLFDYEIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTIFDSGPGDSNLIGALR
ALATILERRPAVLRLLLLAAFALVVILFHFLLAPFTALFHTHFYDRLQDSGSCWPELYLYSRADKVVSAR
DVERMVEARLAHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDFMHNCVQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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