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Report for CCDS71873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71873.1 Public Mus musculus 7 Tfpt 23 108 98 CCDS HistoryNCBI Gene:69714Re-query CCDS DB by CCDS ID:71873.1Re-query CCDS DB by GeneID:69714See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108641.9 ENSMUSP00000104281.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108641.9Link to Ensembl Protein Viewer:ENSMUSP00000104281.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108641Re-query CCDS DB by Protein ID:ENSMUSP00000104281
Original member NCBI NM_001290381.1 NP_001277310.1 Updated not alive Link to Nucleotide Sequence:NM_001290381.1Link to Protein Sequence:NP_001277310.1Re-query CCDS DB by Nucleotide ID:NM_001290381Re-query CCDS DB by Protein ID:NP_001277310
Current member NCBI NM_001290381.2 NP_001277310.1 Accepted alive Link to Nucleotide Sequence:NM_001290381.2Link to Protein Sequence:NP_001277310.1Re-query CCDS DB by Nucleotide ID:NM_001290381Re-query CCDS DB by Protein ID:NP_001277310Link to BLAST:NP_001277310.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277310.1 259 Q3U1J1-1 259 100% 0 0

Chromosomal Locations for CCDS 71873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3620355 3620474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3620747 3620983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3621063 3621132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3624599 3624669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3628828 3629086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3629552 3629574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGGAGTTGGAACAGAGAGAGGGGACCATGGCAGCCGTGGGCTTTGAAGAGTTCTCAGCGCCACCAGGCT
CAGAGCTGGCTCTGCCTCCCCTGTTTGGTGGCCACATCCTAGAAAGTGAGCTAGAGACAGAAGTGGAATT
TGTGTCCGGTGGTCTGGGTGATTCAGGACTCCGGGAGCGAGATGAAGAGGAAGAGGCAGCCCGGGGTCGA
AGGCGTCGCCAGCGGGAACTAAATCGTAGAAAGTACCAGGCACTAGGTCGGCGCTGCCGGGAGATCGAGC
AGGTGAATGAGCGAGTCTTGAACAGGCTCCATCAGGTGCAAAGGATAACTCGGAGACTCCAGCAGGAGCG
CAGGTTCCTCATGAGGGTGCTGGACTCCTACGGGGATGACTACCGAGATAGCCAGTTCACCATTGTGTTG
GAGGATGATGGCAGCCAAGGCACAGATGTCCCTACCCCAGGCAATGCTGAGAATGAACCTCCAGAGAAAG
AGGGGCTTTCCCCATCCCAAAGGACAACTGCAACCTTAGACCCCACCAGCCCAGCCCCTGGCGAGGGGCC
CAGTGGGCGGAAGAGGCGGCGGGCGCCACGGGTGGGGGCTTCATTGACTCCAGAACTGGCCCCAGTGCAG
GTGGGAGCCGAGGGCTGGGGCCAAGGCGTGATTAAGGTTGAGGAAGACTTTGGCTTTGAAGCAGATGAGG
CCTTGGATTCAAGTTGGGTTTCCCGAGAGCCAGACAAATTGCTACCCTACCCTACCCTGGCCAGCCCACC
CTTTGACTAA

Translation (259 aa):
MELEQREGTMAAVGFEEFSAPPGSELALPPLFGGHILESELETEVEFVSGGLGDSGLRERDEEEEAARGR
RRRQRELNRRKYQALGRRCREIEQVNERVLNRLHQVQRITRRLQQERRFLMRVLDSYGDDYRDSQFTIVL
EDDGSQGTDVPTPGNAENEPPEKEGLSPSQRTTATLDPTSPAPGEGPSGRKRRRAPRVGASLTPELAPVQ
VGAEGWGQGVIKVEEDFGFEADEALDSSWVSREPDKLLPYPTLASPPFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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