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Report for CCDS71921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71921.1 Public Mus musculus 7 Actmap 23 108 98 CCDS HistoryNCBI Gene:414069Re-query CCDS DB by CCDS ID:71921.1Re-query CCDS DB by GeneID:414069See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108379.7 ENSMUSP00000104016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108379.7Link to Ensembl Protein Viewer:ENSMUSP00000104016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108379Re-query CCDS DB by Protein ID:ENSMUSP00000104016
Original member Current member NCBI NM_001290513.1 NP_001277442.1 Accepted alive Link to Nucleotide Sequence:NM_001290513.1Link to Protein Sequence:NP_001277442.1Re-query CCDS DB by Nucleotide ID:NM_001290513Re-query CCDS DB by Protein ID:NP_001277442Link to BLAST:NP_001277442.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277442.1 336 J3QPC3-2 336 100% 0 0

Chromosomal Locations for CCDS 71921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27197014 27197366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27200554 27200622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27201020 27201144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27202408 27202537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27202627 27202697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27203756 27204011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27204379 27204385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGACTTCTCCATGCTCTTTCCCCCTAAAACCCACAATCTCTCCAATAATTCATGAGACCCCAGACACCA
ACATTCCACCTCCTTTACCTCTAAATCCCCCGGACCTAGCTTTACCATCCCCTCCTTGTAGTCTCCATAC
ATCTATTTCATCCCCACTGCCGCCCCCTCCCCCCCCTCCTGCTCCTCCCCCTCCCCCTCCCCCTCCCCCT
CTACCCTCTGCTGTGGAGCCTGTTCTCCCTCATGTCTATGGCCTGAAGAACAGCCAGCTCCTGAAGGAGG
CCTTAGAGAAGGCTGGCCCAGCCCCCAAAGGCAAAGAGGATGTGAAGAGGCTCCTGAAGCTGCACAAGGA
CCGGTTTCGAAGTGACCTGCAGTGGATCCTCTTTTGTGCTGACCTGCCATCATGCATCCAGGAAGGCCCT
CAGTGTGGACTGGTGGCCTTGTGGATGGCAGAAGCTCTTCTGTCAACACCTGACAGCGTCTCTCTGGAAA
GACTAGTGCAGGTGGCCAAGGAGAGAGGCTACACCGCACAGGGAGAAATGTTCTCAGTGGCTGACATGGC
CAAACTGGCCCAGGAGACTTTGGACTGCCAGGCTGAGCTCCTGTGTGGTGGCTTGGGTGGTCCCAACAGA
GAACGAGTTCTACAGCACCTCATCACTGGACATCCCCTGCTCATTCCCTATGATGAGGATTTCAACCACG
AGCCGTGTCAAAAGAAAGGCCATAAGGCCCACTGGGCAGTGAGTGCAGGGGTCCTGATAGGTGTGCAGAA
TGTGCCAAGCCCTGGCTACATTGAAGACTCTGAGCTACCAGGCCTCTTCCACCCAGTGCCTGGTGCACCC
CACCAACCACCATCCTTCCCAGAGGAAAGCTCCCCAGGTGCCCTCTTCCTTCTCTCCAAGCAGGGCAAGA
GTTGGCATTACCAGCTGTGGGACTACAGCCAAGTCCGGGAGAGCAACCTGCAGCTGACAGACTTCTCACC
CGCAAGGGCTGCCGATGGACAGGTGTGGTAG

Translation (336 aa):
MTSPCSFPLKPTISPIIHETPDTNIPPPLPLNPPDLALPSPPCSLHTSISSPLPPPPPPPAPPPPPPPPP
LPSAVEPVLPHVYGLKNSQLLKEALEKAGPAPKGKEDVKRLLKLHKDRFRSDLQWILFCADLPSCIQEGP
QCGLVALWMAEALLSTPDSVSLERLVQVAKERGYTAQGEMFSVADMAKLAQETLDCQAELLCGGLGGPNR
ERVLQHLITGHPLLIPYDEDFNHEPCQKKGHKAHWAVSAGVLIGVQNVPSPGYIEDSELPGLFHPVPGAP
HQPPSFPEESSPGALFLLSKQGKSWHYQLWDYSQVRESNLQLTDFSPARAADGQVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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