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Report for CCDS72268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72268.1 Public Mus musculus 9 Rora 23 108 98 CCDS HistoryNCBI Gene:19883Re-query CCDS DB by CCDS ID:72268.1Re-query CCDS DB by GeneID:19883See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113624.2 ENSMUSP00000109254.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113624.2Link to Ensembl Protein Viewer:ENSMUSP00000109254.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113624Re-query CCDS DB by Protein ID:ENSMUSP00000109254
Original member NCBI NM_001289916.1 NP_001276845.1 Updated not alive Link to Nucleotide Sequence:NM_001289916.1Link to Protein Sequence:NP_001276845.1Re-query CCDS DB by Nucleotide ID:NM_001289916Re-query CCDS DB by Protein ID:NP_001276845
Current member NCBI NM_001289916.2 NP_001276845.1 Accepted alive Link to Nucleotide Sequence:NM_001289916.2Link to Protein Sequence:NP_001276845.1Re-query CCDS DB by Nucleotide ID:NM_001289916Re-query CCDS DB by Protein ID:NP_001276845Link to BLAST:NP_001276845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276845.1 467 P51448-2 467 100% 0 0

Chromosomal Locations for CCDS 72268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 69290021 69290048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69348132 69348217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69361739 69361880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69364166 69364561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69371215 69371336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69373089 69373221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69374015 69374122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69375385 69375495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69376778 69376890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69378797 69378961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGTATTTTGTGATCGCAGCGATGAAAGCTCAAATTGAAATTATTCCATGCAAGATCTGTGGAGACAAAT
CGTCAGGAATCCATTATGGTGTCATTACGTGTGAAGGCTGCAAGGGCTTTTTCAGGAGAAGTCAGCAGAG
CAATGCCACCTACTCCTGTCCTCGTCAGAAGAACTGTTTGATTGATCGGACCAGCAGAAACCGCTGCCAG
CATTGTCGGCTGCAGAAATGCCTGGCCGTGGGGATGTCTCGAGATGCTGTCAAGTTTGGTCGGATGTCCA
AGAAGCAGAGAGACAGCTTGTACGCCGAGGTGCAGAAGCACCGGATGCAGCAGCAGCAGCGAGACCACCA
GCAGCAGCCTGGGGAGGCGGAGCCGCTGACGCCCACCTACAACATCTCAGCCAATGGGCTGACGGAACTG
CATGATGACCTCAGCACCTATATGGATGGGCACACCCCCGAGGGCAGCAAGGCCGACTCAGCCGTCAGCA
GCTTCTACCTGGACATCCAGCCCTCCCCAGACCAGTCGGGATTGGACATCAATGGGATCAAACCCGAACC
CATATGTGACTACACACCAGCATCTGGCTTCTTCCCCTACTGTTCCTTCACCAACGGAGAGACTTCCCCA
ACCGTGTCCATGGCAGAACTAGAACACCTTGCCCAGAACATATCCAAATCCCACCTGGAAACCTGCCAGT
ACTTGCGGGAAGAGCTCCAGCAGATAACGTGGCAGACCTTCCTGCAGGAGGAGATTGAAAACTACCAGAA
CAAGCAGAGAGAGGTGATGTGGCAGCTGTGTGCCATCAAGATTACAGAAGCTATCCAGTATGTGGTGGAG
TTTGCCAAACGCATTGATGGATTTATGGAGCTGTGTCAAAATGATCAAATTGTGCTTCTAAAAGCAGGCT
CGCTAGAGGTGGTGTTTATTAGGATGTGCCGTGCCTTTGACTCTCAGAACAACACCGTGTACTTTGACGG
GAAGTATGCGAGCCCCGATGTCTTCAAGTCCCTAGGTTGTGAAGACTTCATCAGCTTTGTGTTTGAATTT
GGGAAGAGTTTGTGTTCTATGCACCTGACCGAAGACGAAATCGCGTTATTTTCTGCATTCGTACTGATGT
CAGCGGATCGCTCGTGGCTTCAGGAAAAGGTAAAAATAGAAAAGCTGCAACAGAAAATTCAGCTGGCCCT
TCAGCACGTCCTACAGAAGAACCACCGAGAAGATGGAATTCTAACCAAGCTAATATGCAAGGTGTCTACG
TTAAGAGCCCTATGTGGACGACATACGGAAAAGCTAATGGCATTTAAAGCAATATACCCAGACATTGTGC
GACTCCATTTTCCTCCATTATACAAGGAATTGTTCACTTCAGAATTTGAGCCAGCCATGCAAATCGATGG
GTAA

Translation (467 aa):
MYFVIAAMKAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQ
HCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTEL
HDDLSTYMDGHTPEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPEPICDYTPASGFFPYCSFTNGETSP
TVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKITEAIQYVVE
FAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYFDGKYASPDVFKSLGCEDFISFVFEF
GKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLALQHVLQKNHREDGILTKLICKVST
LRALCGRHTEKLMAFKAIYPDIVRLHFPPLYKELFTSEFEPAMQIDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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