NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS72282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72282.1 Public Mus musculus 9 Lrrc1 23 108 98 CCDS HistoryNCBI Gene:214345Re-query CCDS DB by CCDS ID:72282.1Re-query CCDS DB by GeneID:214345See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183873.7 ENSMUSP00000139226.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183873.7Link to Ensembl Protein Viewer:ENSMUSP00000139226.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183873Re-query CCDS DB by Protein ID:ENSMUSP00000139226
Original member Current member NCBI NM_001146048.1 NP_001139520.1 Accepted alive Link to Nucleotide Sequence:NM_001146048.1Link to Protein Sequence:NP_001139520.1Re-query CCDS DB by Nucleotide ID:NM_001146048Re-query CCDS DB by Protein ID:NP_001139520Link to BLAST:NP_001139520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139520.1 524 Q80VQ1-1 524 100% 0 0

Chromosomal Locations for CCDS 72282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 77432122 77432280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77433994 77434130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77435047 77435219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77442177 77442292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77451358 77451441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77452603 77452721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77455158 77455302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77457390 77457464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77457831 77457894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77458071 77458127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77468558 77468647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77472152 77472230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77499234 77499351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 77544465 77544623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTTCCACTGCATTCCCCTGTGGCGGTGCAACCGTCATGTGGAGGCCATCGACAAGCGCCACTGCTCGC
TGGTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGCAGCCTGGAGGAGCTGCTGCTGGACGCCAACCA
GCTCCGGGAGCTCCCCGAGCAATTTTTCCAGCTAGTCAAATTACGGAAGCTTGGGCTCAGTGATAATGAA
ATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTCGTGGAACTTGACGTGTCCCGGAATGATA
TACCTGAAATTCCAGAAAGCATCGCCTTCTGTAAAGCGCTGCAGGTAGCTGACTTCAGCGGAAACCCACT
CACCAGGTTGCCTGAGAGCTTTCCTGAACTACAGAACTTAACGTGTCTTTCTGTAAATGACATCTCGCTG
CAGTCTCTGCCAGAGAATATTGGAAATCTCTATAACCTGGCTTCACTGGAACTGAGAGAGAATCTTCTTA
CATATCTTCCTGACTCTCTTACCCAACTAAGGAGACTAGAAGAACTTGATTTAGGAAACAATGAAATCTA
CAATTTGCCAGAATCAATTGGGGCACTCCTACATCTGAAGGATCTCTGGTTGGATGGAAATCAGCTGTCT
GAATTACCTCAGGAAATCGGCAATCTGAAGAACCTCCTCTGCCTAGATGTCTCTGAAAACAGGCTGGAGA
GACTTCCTGAAGAGATCAGCGGCCTGACTTCTTTGACATACTTAGTCATTTCCCAGAACTTGCTAGAAAC
AATTCCTGAGGGCATTGGAAAACTAAAGAAGCTGTCAATCTTGAAGTTGGATCAGAACAGACTCACACAG
TTGCCCGAAGCAATTGGGGATTGTGAAAATCTCACGGAGTTAGTTCTTACAGAAAACCGGCTCCTGACTT
TACCTAAGAGCATTGGAAAACTTAAGAAGTTGAGCAACTTGAATGCAGACAGGAATAAATTAGTGTCATT
GCCAAAAGAGATTGGCGGGTGCTGCAGCCTCACCATGTTCTGCATCCGGGACAACAGACTGACTCGGTTA
CCTGCAGAGGTGTCACAGGCCGTGGAACTTCATGTCCTCGACGTGGCAGGGAACAGGTTACATCATCTGC
CCTTATCGCTGACCACCCTGAAGTTGAAGGCCCTGTGGTTATCTGACAACCAGTCGCAGCCTCTCCTCAC
GTTCCAGACAGACATAGACCGAGCCACCGGGGAGAAGATTTTAACGTGTGTCTTACTTCCTCAGATGCCT
TCTGAACCCATCTGCCAAGAGAGCCTGCCGCGTTGCGGTGCCCTGGAGAGTCTGGTAACTGACATGTCTG
AGGAAGCCTGGAATGACCGCTCGGTCCACAGAGTTAGTGCAATCCGGTTTTTGGAAGACGAGAAGGACGA
AGATGAAAACGAAACGAGAACACTTCAGAGGCGAGCCACTCCACACCCAGGGGAATTAAAGAACATGAAA
AAGACGGTGGAGAATTTACGGAACGACATGAATGCCGCCAAAGGACTGGATTCAAACAAAAACGAGGTCA
ACCACGCCGCTGAGCGCGTGACCACATCGGTGTAG

Translation (524 aa):
MFHCIPLWRCNRHVEAIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVKLRKLGLSDNE
IQRLPPEIANFMQLVELDVSRNDIPEIPESIAFCKALQVADFSGNPLTRLPESFPELQNLTCLSVNDISL
QSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELDLGNNEIYNLPESIGALLHLKDLWLDGNQLS
ELPQEIGNLKNLLCLDVSENRLERLPEEISGLTSLTYLVISQNLLETIPEGIGKLKKLSILKLDQNRLTQ
LPEAIGDCENLTELVLTENRLLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTMFCIRDNRLTRL
PAEVSQAVELHVLDVAGNRLHHLPLSLTTLKLKALWLSDNQSQPLLTFQTDIDRATGEKILTCVLLPQMP
SEPICQESLPRCGALESLVTDMSEEAWNDRSVHRVSAIRFLEDEKDEDENETRTLQRRATPHPGELKNMK
KTVENLRNDMNAAKGLDSNKNEVNHAAERVTTSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH