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Report for CCDS72327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72327.1 Public Mus musculus X Btbd35f3 23 108 98 CCDS HistoryNCBI Gene:100042168Re-query CCDS DB by CCDS ID:72327.1Re-query CCDS DB by GeneID:100042168See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 72327.1
This gene is one of a cluster of germ-cell less-like genes that are found on chromosome X. This family member lacks best hit transcript support, and this CCDS representation is therefore inferred based on paralogous transcript alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 72327.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140300.1 ENSMUSP00000117303.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140300.1Link to Ensembl Protein Viewer:ENSMUSP00000117303.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140300Re-query CCDS DB by Protein ID:ENSMUSP00000117303
Original member Current member NCBI NM_001243001.1 NP_001229930.1 Accepted alive Link to Nucleotide Sequence:NM_001243001.1Link to Protein Sequence:NP_001229930.1Re-query CCDS DB by Nucleotide ID:NM_001243001Re-query CCDS DB by Protein ID:NP_001229930Link to BLAST:NP_001229930.1

Chromosomal Locations for CCDS 72327.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 4037759 4039249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGGGCTTTTAGTCAGCAGGGTCTTGAGATGCAGGGATTCCAGTCTGTTAGAGCCACAGCCAGAAGCCA
TAGCCGGAGCCAGCTACATTCCTGGCAGTCGCAAGCGAAAAAGAAACAGTTTGGAGGAGTTGGCAACAAG
TTCTAATGTTCATGGACCTCAAAACCAGCGAATGTATCCACATCAAGTTCTCAACTACATCTACTGGAAA
AGGGTTAAGATCTCATCTAATGATGCTTATCAAAACTTATTTTTGGACGGGCATGATAGCGACATTAAAA
TCCGTGCTCTGGGAAAAACATGGTGTTTACACAAAGTATTTTTATGTCAGTCAGGCTACTTTGCTAACAT
TCTCAAAGGTACTTGGAGAGAATCACACCATGGTGTTATAAATCTGATCATTAAGAATATTGATACCCGA
TCTCTGCATTTTGTGTTTGGTGCTTTGTACACGGATGCGGATTTGTCAATAACACCTCTGGAAGTTCCTC
AAGTTTTGGCAGCAGCATGCCTGCTTCGGGTGGATCGAGTAATTCAGCAGTGTGAAGGAATCATGAAAGA
AACTATCAACAGGAACACTGTGTGCTCCTATTATTTGGCAGCAGAAACCTATAGATTAAAAGCAGTAAAG
ACGAGATGCTTTGAATGGCTTCTTTGCAATTTGATGGTACATCCAAGTGTGGCACTTTACAAGGAAGTAG
ACTTGAAGTTGATGTATCTTCTAGCACTGTCTTCTGACTTACTAGTCATGCAAAAGGAGATTGATGTATA
TACCACACTAAAAATATGGATGTTCCTTTATCTTAATCCATGCTGGAACGGAACCATGAAACAGCTTTTA
CAACACGCAAACAACTGGCTTTCCACCCACATGGCATATGTTGATAACATCAGTTTTCTTGAAAGTGAAG
AAGGACTAATATTTCAACCAGTGTTTAAAAAGCTGAGATTTCAGCACATCATCTGTGACTTGACTTCCAC
AACTATTCTTGAACAAGATCGACTAATACCTATGGCATGGTTGTCACCCATTTACAAACAACAGTGGTTG
ACTTTGCTGCGAACACAAGAATATGGGGTAATTGGACCACAAGTTATCAATGAACAAGAACTTGAAGAAT
GCACCATGAGGTGTGGTACAATGATCCCCAAGGATGGAAGATATACTTGGAAGTGGTCAGTTGGACGACT
TGGCTTTCCTTTACGTGTGACCTTTACCAGGCAGTGTGTAATTTTAAGGCAACGGTGTCAGAGGTGTGAT
GGTTCTGCTTGCCACAACCATATCCGAAATGTCATATTCAGAATAACTTTGGTGTGTTTTGATTCCAACA
AAAGAGTAACTTTCAGAAAGACAACAGGTTATAAAATCCTCACCTTTGAATATAAGGAGGAGCAAATTGT
AATGAAATTGGATAGTGATGTTCTAACCTTCCCTATGTGTATATTCTGCAATTTCCTTTTTGTAAACCTA
GGAAATGCAGAAAACAAGTAA

Translation (496 aa):
MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWK
RVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTR
SLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVK
TRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLL
QHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWL
TLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCD
GSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNL
GNAENK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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