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Report for CCDS72329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72329.1 Public Mus musculus X Prickle3 23 108 98 CCDS HistoryNCBI Gene:54630Re-query CCDS DB by CCDS ID:72329.1Re-query CCDS DB by GeneID:54630See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033485.13 ENSMUSP00000033485.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033485.13Link to Ensembl Protein Viewer:ENSMUSP00000033485.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033485Re-query CCDS DB by Protein ID:ENSMUSP00000033485
Original member NCBI NM_001290624.1 NP_001277553.1 Updated not alive Link to Nucleotide Sequence:NM_001290624.1Link to Protein Sequence:NP_001277553.1Re-query CCDS DB by Nucleotide ID:NM_001290624Re-query CCDS DB by Protein ID:NP_001277553
Current member NCBI NM_001290624.2 NP_001277553.1 Accepted alive Link to Nucleotide Sequence:NM_001290624.2Link to Protein Sequence:NP_001277553.1Re-query CCDS DB by Nucleotide ID:NM_001290624Re-query CCDS DB by Protein ID:NP_001277553Link to BLAST:NP_001277553.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277553.1 624 Q80VL3 624 100% 0 0

Chromosomal Locations for CCDS 72329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7657459 7657500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7658621 7658706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7659536 7659719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7663465 7663578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7663853 7663990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7664930 7665133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7665227 7665413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7666272 7666571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7667112 7667731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1875 nt):
ATGTTCGCGCGTGGGTCCCGGAGGCGCCGCTCTGGGCGTGCGCCTCCAGAGGCAGAGGACCCTGCCCGCG
GCCAGCCTTGCAATTCCTGCAGGGAACAGTGCCCAGGCTTCCTGCTGCATGGCTGGAGAAAGATCTGCCA
GCACTGCAAATGCCCGCGGGAGGAGCATGCTGTACGCACTGTACCTGTGGACCTAGAACGCATCATGTGC
CGGCTCATCTCAGACTTCCAGCGCCACTCCATTTCCGATGACGACTCAGGCTGTGCCTCAGAGGAGTATG
CCTGGGTACCCCCTGGCCTTAAGCCGGAGCAGGTTTACCAGTTTTTCAGTTGCCTTCCAGAGGACAAGGT
CCCCTATGTCAACAGTCCTGGGGAGAAATACAGAATAAAGCAGCTACTGCACCAGCTACCCCCACACGAC
AGTGAGGCACAGTACTGCACGGCCCTGGAAGAGGAGGAGAAGAAAGAGTTGCGAGCCTTCAGCCAGCAGA
GGAAGCGGGAGAATCTGGGACGAGCCACCGTTCGAATCTTCCCAGTGACCATTACTGGGGCCATCTGCGA
GGAGTGTGGCAAGCAGATCGGCGGTGGGGACATTGCAGTCTTTGCCAGCCGCGCAGGCCTTGGTGCCTGT
TGGCACCCTCAGTGCTTTGTGTGTACCACGTGCCAGGAGCTGCTGGTTGACCTCATCTACTTCTATCATG
CTGGCAAGGTCTACTGTGGGCGCCACCATGCTGAGTGTCTGCGTCCTCGCTGCCAAGCGTGTGATGAGAT
CATCTTCTCCCCTGAATGTACGGAGGCGGAGGGGCGACACTGGCACATGGGTCACTTCTGCTGTTTCGAG
TGTGAAGCTTCGTTAGGAGGGCAGCGCTATGTCATGCGTCAGAGCCGCCCCCACTGCTGTGCCTGCTATG
AGGCCCGCCATGCGGAATACTGTGATGGCTGTGGGGAACACATCGGCCTGGACCAGGGCCAGATGGCTTA
TGAGGGCCAACACTGGCACGCTTCAGATCGCTGCTTCTGCTGTAGCCGTTGCAGTCGACCTCTTCTGGGC
CGCCCTTTCCTGCCACGCCGAGGCCTGATCTTCTGCTCACGAGCCTGCAGCCTTGGGTCTGAGACCACTG
CTCCAGGGCCCGGCCGACGCAGCTGGAGCGCCGGCACCGTCACCACACCGCTCACAACTTCTACAGCTTC
TTTCTCAGCTACGGAGGGGACATCAGAGACAGCCAGCAAAGGCACCTGTACCAAGGCAGAGCCTGCTGCA
GGCCCTGAAGAGCCCTCCCACTTTCTGAGAGGGGCCCCCCACCGCCATTCTATGCCTGAACTGGGACTCC
GCAGTGCTCCTGAGCCACCCACAGAATCCCCTGGCCATCCTGCCCCGCATCCAGATGATAATGCCTTTGG
TCGCCAAAGTACACCTCGTGTCAGCTTCCGAGACCCTCTGGTGTCTGAAGGAGGTCCACGAAGGACCCTT
AGTGCACCTCCAGCCCAGCGCCGTAGACCACGAAGTCCCCCACCCAGGACCCCCAGCTGCCACCACCACC
ACCATCATCGCCGCCGGCGCCAGCGGCACCGCCGCCGAGGGAGCCACCATCACCACCACCATCCTGGCAG
ACATGGCCACCATCGCTGTGACTTGGGATCAGGTTCAGATTCAGGATCTTGCTCCAGCTCACCCTCCAGC
CCCAGTTCAGAGTCTTCTGAGGATGATGGCTTCTTCCTGGGGGAACGTATCCCACTGCCCCCTCACCTGT
GCAGGCCCAGGACCACTCAGGACACCTCAACCGAAACCTTTAACTCCCCAGCCCAGCCACTTGTCCAGGA
GTCTCACCCCGTGATGCCTCGCCAGACCCGGGACAAGAACTGCATCGTGGCTTAA

Translation (624 aa):
MFARGSRRRRSGRAPPEAEDPARGQPCNSCREQCPGFLLHGWRKICQHCKCPREEHAVRTVPVDLERIMC
RLISDFQRHSISDDDSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHD
SEAQYCTALEEEEKKELRAFSQQRKRENLGRATVRIFPVTITGAICEECGKQIGGGDIAVFASRAGLGAC
WHPQCFVCTTCQELLVDLIYFYHAGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMGHFCCFE
CEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCSRPLLG
RPFLPRRGLIFCSRACSLGSETTAPGPGRRSWSAGTVTTPLTTSTASFSATEGTSETASKGTCTKAEPAA
GPEEPSHFLRGAPHRHSMPELGLRSAPEPPTESPGHPAPHPDDNAFGRQSTPRVSFRDPLVSEGGPRRTL
SAPPAQRRRPRSPPPRTPSCHHHHHHRRRRQRHRRRGSHHHHHHPGRHGHHRCDLGSGSDSGSCSSSPSS
PSSESSEDDGFFLGERIPLPPHLCRPRTTQDTSTETFNSPAQPLVQESHPVMPRQTRDKNCIVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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