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Report for CCDS72335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72335.1 Public Mus musculus X Otud5 23 108 98 CCDS HistoryNCBI Gene:54644Re-query CCDS DB by CCDS ID:72335.1Re-query CCDS DB by GeneID:54644See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72335.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115668.9 ENSMUSP00000111332.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115668.9Link to Ensembl Protein Viewer:ENSMUSP00000111332.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115668Re-query CCDS DB by Protein ID:ENSMUSP00000111332
Original member NCBI NM_001290537.1 NP_001277466.1 Updated not alive Link to Nucleotide Sequence:NM_001290537.1Link to Protein Sequence:NP_001277466.1Re-query CCDS DB by Nucleotide ID:NM_001290537Re-query CCDS DB by Protein ID:NP_001277466
Current member NCBI NM_001290537.2 NP_001277466.1 Accepted alive Link to Nucleotide Sequence:NM_001290537.2Link to Protein Sequence:NP_001277466.1Re-query CCDS DB by Nucleotide ID:NM_001290537Re-query CCDS DB by Protein ID:NP_001277466Link to BLAST:NP_001277466.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277466.1 523 Q3U2S4-2 523 100% 0 0

Chromosomal Locations for CCDS 72335.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7842117 7842468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7842598 7842710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7856304 7856397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867515 7867579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867667 7867823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7867923 7868071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7871996 7872199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7873554 7873755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7873840 7873953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7874233 7874354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGACTATTCTCCCCAAAAAGAAGCCGCCACCTCCCGACGCCGACCCGGCCAACGAACCGCCGCCGCCCG
GGCCGCTGCCCCCGGCGCCTCGGCGCGGTGCGGGTGTAGGCGTGGGTGGCGGCGGCACGGGTGTGGGCGG
AGGAGAGCGCGACCGTGACTCCGGCGTCGTGGGGGCCCGTCCCCGGGCTTCGCCGCCACCTCAGGGCCCG
CTCCCGGGGCCGCCTGGTGCTCTTCATCGTTGGGCACTGGCCGTGCCGCCTGGCGCAGTCGCGGGCCCTC
GGCCACAGCAGGCTTCTCCACCTCCTTGTGGGGGCCCCGGTGGCCCCGGCGGCGGTCCTGGTGACGCTCT
TGTTGGCGGGGCCAGTCCGGAACGTGAAGAGGTCGGAGCGGGCTACAACAGTGAAGACGAGTATGAAGCT
GCCGCAGCGCGAATCGAGGCCATGGATCCCGCCACTGTAGAACAGCAGGAACACTGGTTTGAAAAGGCCT
TGCGGGACAAGAAAGGCTTCATCATCAAGCAGATGAAGGAGGACGGTGCCTGTCTATTTCGGGCTGTAGC
TGACCAGGTGTATGGAGACCAGGACATGCATGAGGTTGTTCGAAAGCATTGCATGGACTATCTGATGAAG
AACGCTGATTACTTCTCCAACTATGTCACAGAAGACTTCACCACCTATATCAACCGGAAGCGGAAAAACA
ACTGCCATGGCAACCACATTGAAATGCAGGCTATGGCAGAGATGTACAACCGTCCTGTGGAGGTGTATCA
ATATAGCACAGAACCTATCAACACATTCCATGGGATCCATCAAAATGAAGATGAACCCATCCGTGTCAGC
TACCACCGGAATATCCACTATAATTCAGTGGTGAATCCTAACAAGGCCACTATTGGTGTGGGGCTGGGCC
TACCGTCATTTAAGCCAGGGTTTGCAGAGCAGTCCCTGATGAAGAATGCCATAAAGACATCAGAAGAGTC
ATGGATTGAACAGCAAATGCTGGAAGACAAGAAACGAGCTACAGACTGGGAGGCCACAAATGAGGCCATA
GAGGAGCAGGTGGCTCGAGAATCTTACCTTCAGTGGCTGAGGGATCAAGAGAAACAGGCCCGCCAGGTCC
GGGGACCCAGCCAGCCCCGGAAAGCCAGTGCCACATGCAGTTCAGCCACAGCAGCAGCCTCCAGTGGCCT
GGAGGAATGGACTAGTCGGTCCCCACGGCAACGAAGTTCAGCCTCGTCACCTGAGCACCCTGAACTGCAT
GCCGAGCTAGGCATTAAGCCCCCTTCCCCAGGCACTGTGTTAGCTCTTGCCAAACCTCCTTCACCCTGTG
CACCAGGTACAAGCAGTCAGTTCTCAGCAGGGGGTGATCGGGCCACCTCTCCTCTTGTGTCCCTCTACCC
TGCTCTGGAGTGCCGGGCCCTCATCCAGCAGATGTCCCCCTCTGCCTTTGGTCTGAATGATTGGGACGAT
GATGAGATCCTAGCATCGGTGCTGGCAGTGTCCCAACAGGAATACCTAGACAGTATGAAGAAAAACAAAG
TGCACAGAGAGCCACCCCCAGACAAGAGTTGA

Translation (523 aa):
MTILPKKKPPPPDADPANEPPPPGPLPPAPRRGAGVGVGGGGTGVGGGERDRDSGVVGARPRASPPPQGP
LPGPPGALHRWALAVPPGAVAGPRPQQASPPPCGGPGGPGGGPGDALVGGASPEREEVGAGYNSEDEYEA
AAARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMK
NADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVS
YHRNIHYNSVVNPNKATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAI
EEQVARESYLQWLRDQEKQARQVRGPSQPRKASATCSSATAAASSGLEEWTSRSPRQRSSASSPEHPELH
AELGIKPPSPGTVLALAKPPSPCAPGTSSQFSAGGDRATSPLVSLYPALECRALIQQMSPSAFGLNDWDD
DEILASVLAVSQQEYLDSMKKNKVHREPPPDKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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