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Report for CCDS72340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72340.1 Public Mus musculus X Ftsj1 23 108 98 CCDS HistoryNCBI Gene:54632Re-query CCDS DB by CCDS ID:72340.1Re-query CCDS DB by GeneID:54632See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72340.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115595.7 ENSMUSP00000111258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115595.7Link to Ensembl Protein Viewer:ENSMUSP00000111258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115595Re-query CCDS DB by Protein ID:ENSMUSP00000111258
Original member NCBI NM_001290430.1 NP_001277359.1 Updated not alive Link to Nucleotide Sequence:NM_001290430.1Link to Protein Sequence:NP_001277359.1Re-query CCDS DB by Nucleotide ID:NM_001290430Re-query CCDS DB by Protein ID:NP_001277359
Current member NCBI NM_001290430.2 NP_001277359.1 Accepted alive Link to Nucleotide Sequence:NM_001290430.2Link to Protein Sequence:NP_001277359.1Re-query CCDS DB by Nucleotide ID:NM_001290430Re-query CCDS DB by Protein ID:NP_001277359Link to BLAST:NP_001277359.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277359.1 322 Q8CBC7-2 322 100% 0 0

Chromosomal Locations for CCDS 72340.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8245075 8245101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8245284 8245472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8245552 8245649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246336 8246419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246532 8246634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246727 8246780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8246869 8246921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8248979 8249057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250396 8250486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250569 8250638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8250880 8251000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGGACGGACATCTAAGGATAAACGGGATGTCTACTACCGCCTGGCCAAGGAGAATGGCTGGCGGGCCC
GAAGCGCTTTCAAGCTCCTGCAACTGGATGAGGAATTCCAACTCTTCAAAGGTGTGAAGCGAGCGGTTGA
CTTGTGTGCAGCCCCAGGCAGCTGGAGCCAGGTGCTGAGCCAGAAGGTTGGGGGCCAGGGTTCTGGTCAG
GTGGTGGCCGTGGACTTACAGGCTATGGCTCCACTGCCAGGTGTGATACAGATACAGGGCGACATCACTC
AGCTTTCCACTGCCAAGGAGATCATCCAGCACTTTGAAGGCTGCCCTGCTGACCTAGTAGTGTGTGACGG
GGCTCCTGATGTCACTGGTCTCCATGATGTGGATGAGTACATGCAGGCCCAGCTTCTGCTAGCTGCTCTC
AACATCGCTACTCATGTCTTGAAGCTAGGGGGCTGCTTCGTGGCCAAGATATTCCGAGGCCGGGATGTGA
CCCTGCTCTACAGCCAACTACGTATCTTCTTCTCCAGTGTGCTCTGCGCTAAGCCCAAGAGCAGCCGGAA
CTCTAGCATTGAGGCCTTTGCTGTGTGTCAGGGTTATGACCCTCCTGAGGGCTTCATTCCAGACCTGACC
AGACCCCTGCTGAACCACTCATATGATTTCAACCAGTTGGATGGTCCCACCCGTGTTATTGTGCCCTTTG
TGGCCTGTGGGGACCTCAGCGCCTACGATTCGGACCGCACTTACTCTCTGGATCTAGACGGTGGCTCTGA
GTACAAATATACTCCACCCACACAGCCCCCCATCGCACCCCCATACCAAGAGGCCTGCAGGTTGAAGAAG
AATGGACAGCTGGCCAAGGAACTCCTCCCCCAAGAATGCTCCATCAACAGTGTGGACAAGTTGCCCCAGC
CTCTGGCTATCCATACCCTGCTAGACCCCAAGGTGGAAGACAATGAAATTCATTGTTGA

Translation (322 aa):
MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDEEFQLFKGVKRAVDLCAAPGSWSQVLSQKVGGQGSGQ
VVAVDLQAMAPLPGVIQIQGDITQLSTAKEIIQHFEGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAAL
NIATHVLKLGGCFVAKIFRGRDVTLLYSQLRIFFSSVLCAKPKSSRNSSIEAFAVCQGYDPPEGFIPDLT
RPLLNHSYDFNQLDGPTRVIVPFVACGDLSAYDSDRTYSLDLDGGSEYKYTPPTQPPIAPPYQEACRLKK
NGQLAKELLPQECSINSVDKLPQPLAIHTLLDPKVEDNEIHC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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