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Report for CCDS72346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72346.1 Public Mus musculus X Rp2 23 108 98 CCDS HistoryNCBI Gene:19889Re-query CCDS DB by CCDS ID:72346.1Re-query CCDS DB by GeneID:19889See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115387.7 ENSMUSP00000111045.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115387.7Link to Ensembl Protein Viewer:ENSMUSP00000111045.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115387Re-query CCDS DB by Protein ID:ENSMUSP00000111045
Original member NCBI NM_001290644.1 NP_001277573.1 Updated not alive Link to Nucleotide Sequence:NM_001290644.1Link to Protein Sequence:NP_001277573.1Re-query CCDS DB by Nucleotide ID:NM_001290644Re-query CCDS DB by Protein ID:NP_001277573
Current member NCBI NM_001290644.2 NP_001277573.1 Accepted alive Link to Nucleotide Sequence:NM_001290644.2Link to Protein Sequence:NP_001277573.1Re-query CCDS DB by Nucleotide ID:NM_001290644Re-query CCDS DB by Protein ID:NP_001277573Link to BLAST:NP_001277573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277573.1 310 Q9EPK2-4 310 100% 0 0

Chromosomal Locations for CCDS 72346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20376899 20377546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20381705 20381819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20397221 20397306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20397652 20397735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGTTTAGTGGACTGAAGGATGAAACAGTAGGTCGCTTACCTGGAAAAGTGGCAGGACAACAATTTGTCA
TTCAAGACTGTGAGAACTGTAACATCTATATTTTTGACCACTCAGCTACTATTACCATTGATGACTGCAC
TAACTGTGTAATTTTTTTGGGACCAGTGAAAGGCAGTGTCTTTTTCCGAAATTGTAGAGATTGCAAGTGC
ACATTGGCTTGCCAGCAATTTCGTGTGAGAGACTGTAGAAAGTTGGAAGTCTTTTTGTGCTGTGCTACTC
AACCCATTATTGAATCTTCCACAAACATCAAGTTTGGCTGTTTTCAATGGTACTACCCTGAATTAGCAGC
CCAATTCAAAGATGCAGGCCTCAGTATCTTCAATAACATTTGGAGTCATGTTCATGATTTTACACCTGTG
TCAGGAGAGCTCAACTGGAGCCTTCTTCCAGAAAATGCCGTGGTTCAAGACTATGTTCCTATCCCAATGA
CTGAAGAATTCAAAGCTGTGCGAATTTCCACAGAAGCCAATAGAAGCATTGTTCCTGTGTCCCGGGGTCA
GAGACAGAAGTACAGTGATGAATCATGTCTTGTGGTATTATTTGCCGATGATTATACAACTGCAAATGCC
AGGAAACTAATTGATGAGATGGTTGGTAAAGGCTTCTCCCTAGTGCAGACAAAGGAAATGTCAATGAAAA
CTGAAGACGCCCAAAGGGTTTTCCAGGAAAAGGCATCAGATTTTTTACTTCTTCTAAACAAAGGTCCTGT
GATTGCCTTGGAATTTAATGGAGATGACGCTGTACAAGAATGTCACCTTATTGTAAATGGGATGTTCAAC
GGGACAAAGATGTTTGTATCAGAAAAGAAGGAGACCGCATCTGGAGATGTTGATAGCTTCTATAACTTTG
CTGAGATCCAGATGGGGATATGA

Translation (310 aa):
MFSGLKDETVGRLPGKVAGQQFVIQDCENCNIYIFDHSATITIDDCTNCVIFLGPVKGSVFFRNCRDCKC
TLACQQFRVRDCRKLEVFLCCATQPIIESSTNIKFGCFQWYYPELAAQFKDAGLSIFNNIWSHVHDFTPV
SGELNWSLLPENAVVQDYVPIPMTEEFKAVRISTEANRSIVPVSRGQRQKYSDESCLVVLFADDYTTANA
RKLIDEMVGKGFSLVQTKEMSMKTEDAQRVFQEKASDFLLLLNKGPVIALEFNGDDAVQECHLIVNGMFN
GTKMFVSEKKETASGDVDSFYNFAEIQMGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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