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Report for CCDS72472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72472.1 Public Mus musculus X Arhgap6 23 108 98 CCDS HistoryNCBI Gene:11856Re-query CCDS DB by CCDS ID:72472.1Re-query CCDS DB by GeneID:11856See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112127.1 ENSMUSP00000107755.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112127.1Link to Ensembl Protein Viewer:ENSMUSP00000107755.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112127Re-query CCDS DB by Protein ID:ENSMUSP00000107755
Original member Current member NCBI NM_001287530.1 NP_001274459.1 Accepted alive Link to Nucleotide Sequence:NM_001287530.1Link to Protein Sequence:NP_001274459.1Re-query CCDS DB by Nucleotide ID:NM_001287530Re-query CCDS DB by Protein ID:NP_001274459Link to BLAST:NP_001274459.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274459.1 795 O54834-4 795 100% 0 0

Chromosomal Locations for CCDS 72472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 169113208 169113222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169220198 169220357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169237490 169237561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169246522 169246781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169248516 169248711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169253578 169253633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169256486 169256636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169257652 169257800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169265423 169265602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169281961 169282058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169300063 169300337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169301756 169301836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169302317 169303011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2388 nt):
ATGTACAAAATATTTGGTGACTTCACCTGGAACAGCATGTCTGGTCGTAGCGTGCGCCTGAGGTCAGTCC
CCATCCAGAGCCTCTCAGAGCTGGAGCGGGCACGACTGCAGGAAGTGGCTTTTTATCAGTTGCAGCAGGA
CTGTGACCTGGGCTGTCAGATCACCATCCCCAAAGATGGACAAAAGAGAAAGAAATCTTTGAGAAAGAAA
CTGGATTCACTAGGGAAGGAAAAGAACAAAGACAAAGAATTCATCCCACAGGCATTTGGAATGCCCTTAT
CCCAAGTCATTGCTAATGACCGGGCATATAAACTGAAGCAAGACTTGCAGAGGGAGGAGCAGAAGGATGC
ATCATCGGATTTTGTGTCTTCCCTCCTCCCATTTGGGAATAAAAAACAAAACAAAGAACTCTCAAGCAGT
AACTCATCTCTCAGCTCAACCTCAGAAACACCAAATGAGTCTACATCACCGAATACTCCAGAACCAGCTC
CTCGGGCCAGGAGAAGGGGCGCCATGTCCGTGGATTCCATCACTGATCTGGATGACAACCAGTCTCGACT
CCTAGAAGCTTTACAACTCTCCTTGCCTGCTGAGGCTCAGAGTAAAAAAGAAAAGGCCAGAGATAAGAAG
CTGAGTCTGAATCCTATTTACAGGCAGGTCCCCAGGCTGGTGGACAGCTGCTGTCAACATCTGGAAAAAC
ATGGCCTCCAGACAGTGGGGATATTCCGAGTTGGAAGCTCAAAGAAGAGAGTAAGACAATTGCGTGAAGA
ATTTGACCGTGGGGTTGATGTCTGTCTGGAAGAGGAGCATAGTGTTCACGATGTGGCAGCCTTGTTAAAG
GAGTTCCTTAGAGACATGCCTGACCCCCTTCTCACAAGGGAGCTATACACTGCATTTATCAACACTCTCC
TGTTGGAGCCTGAGGAACAACTGGGCACCTTGCAACTCCTCATTTACCTTCTACCTCCCTGCAACTGCGA
CACCCTCCACCGCCTCCTACAGTTCCTCTCCATTGTGGCCAGGCATGCTGATGATAATGTCAGCAAAGAT
GGACAAGAGGTTACTGGGAACAAAATGACATCTCTGAACTTAGCCACTATATTTGGACCCAACCTGCTCC
ACAAGCAGAAGTCATCAGACAAAGAATATTCTGTTCAGAGCTCAGCCAGAGCTGAGGAGAGCACAGCCAT
CATAGCTGTGGTACAGAAGATGATTGAAAATTATGAAGCCTTGTTCATGGTTCCCCCAGATCTCCAGAAT
GAAGTGCTGATCAGCCTTCTAGAGACAGATCCAGATGTTGTGGACTACTTGCTCAGAAGAAAGGCTTCCC
AATCCTCGAGCCCTGACATACTTCAGACGGAAGTTTCCTTTTCCATGGGAGGGAGGCATTCATCTACAGA
TTCCAACAAAGCCTCCAGTGGAGACATCTCCCCTTATGACAACAACTCCCCAGTATTGTCTGAGCGCTCC
CTGCTGGCTATGCAAGAGGACAGGGCCCGGGGGGGCTCGGAGAAGCTTTATAAAGTGCCAGAGCAGTATA
CACTGGTGGGCCACTTGTCATCGCCAAAGTCAAAGTCAAGAGAAAGTTCTCCTGGACCAAGGCTTGGAAA
AGAAATGTCAGAGGAGCCTTTCAATATCTGGGGAACTTGGCATTCAACATTAAAAAGTGGATCCAAAGAC
CCAGGAATGACAGGCTCTTATGGCGACATTTTTGAAAGCAGCTCCCTCCGACCGAGGCCTTGTTCTCTTT
CTCAAGGGAACCTTTCCCTGAACTGGCCTCGGTGTCAAGGGAGCCCGACAGGGCTGGACAGTGGCACTCA
GGTAATTCGGAGGACTCAGACGGCGGCCACCGTGGAGCAGTGCAGTGTCCACCTTCCGGTGTCACGTGTC
TGCAGCACTCCCCACATCCAGGACGGCAGCAGGGGGACCAGGCGGCCTGCAGCCAGCTCTGATCCATTTT
TGTCCCTAAACAGCACAGAAGATCTAGCTGAGGGCAAGGAGGATGTTGCCTGGCTGCAAAGCCAGGCCCG
ACCTGTGTACCAGAGACCTCAGGAGAGTGGAAAAGATGACAGGCGCCCCCCTCCTCCTTACCCGGGGTCA
GGGAAGCCTGCCACAACCTCTGCCCAGCTGCCACTAGAGCCTCCCCTGTGGAGGCTCCAGAGGCATGAAG
AAGGTTCAGAAACAGCTGTGGAAGGAGGCCAGCAGGCCTCAGGGGAGCATCAGACCAGGCCAAAAAAACT
GAGCAGCGCCTACTCCCTCTCAGCCAGCGAGCAGGACAAACAGAACTTAGGGGAAGCCAGCTGGCTCGAC
TGGCAGCGAGAGCGGTGGCAGATCTGGGAGCTTCTATCAACTGATAACCCCGACGCCCTCCCGGAAACCC
TAGTATAA

Translation (795 aa):
MYKIFGDFTWNSMSGRSVRLRSVPIQSLSELERARLQEVAFYQLQQDCDLGCQITIPKDGQKRKKSLRKK
LDSLGKEKNKDKEFIPQAFGMPLSQVIANDRAYKLKQDLQREEQKDASSDFVSSLLPFGNKKQNKELSSS
NSSLSSTSETPNESTSPNTPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKEKARDKK
LSLNPIYRQVPRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGVDVCLEEEHSVHDVAALLK
EFLRDMPDPLLTRELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQFLSIVARHADDNVSKD
GQEVTGNKMTSLNLATIFGPNLLHKQKSSDKEYSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQN
EVLISLLETDPDVVDYLLRRKASQSSSPDILQTEVSFSMGGRHSSTDSNKASSGDISPYDNNSPVLSERS
LLAMQEDRARGGSEKLYKVPEQYTLVGHLSSPKSKSRESSPGPRLGKEMSEEPFNIWGTWHSTLKSGSKD
PGMTGSYGDIFESSSLRPRPCSLSQGNLSLNWPRCQGSPTGLDSGTQVIRRTQTAATVEQCSVHLPVSRV
CSTPHIQDGSRGTRRPAASSDPFLSLNSTEDLAEGKEDVAWLQSQARPVYQRPQESGKDDRRPPPPYPGS
GKPATTSAQLPLEPPLWRLQRHEEGSETAVEGGQQASGEHQTRPKKLSSAYSLSASEQDKQNLGEASWLD
WQRERWQIWELLSTDNPDALPETLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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