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Report for CCDS72869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72869.1 Public Homo sapiens 1 ITGA10 24 110 108 CCDS HistoryNCBI Gene:8515Re-query CCDS DB by CCDS ID:72869.1Re-query CCDS DB by GeneID:8515See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72869.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369304.8 ENSP00000358310.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369304.8Link to Ensembl Protein Viewer:ENSP00000358310.3Re-query CCDS DB by Nucleotide ID:ENST00000369304Re-query CCDS DB by Protein ID:ENSP00000358310
Original member Current member NCBI NM_003637.5 NP_003628.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003637.5Link to Protein Sequence:NP_003628.2Re-query CCDS DB by Nucleotide ID:NM_003637Re-query CCDS DB by Protein ID:NP_003628Link to BLAST:NP_003628.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003628.2 1167 O75578-1 1167 100% 0 0

Chromosomal Locations for CCDS 72869.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 145892798 145892863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145893161 145893274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145893540 145893635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895280 145895393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895631 145895711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145895983 145896096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145896268 145896352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145896769 145896858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897011 145897087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897247 145897339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897512 145897653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145897815 145897900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145898110 145898223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145898936 145899078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145899175 145899341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145900057 145900187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145900790 145900993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901135 145901278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901516 145901664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145901877 145902021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902246 145902319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902454 145902619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145902811 145902961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145904052 145904200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145904684 145904811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145906394 145906508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145906733 145906824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145907041 145907150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145907354 145907465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 145909963 145910014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3504 nt):
ATGGAACTCCCCTTCGTCACTCACCTGTTCTTGCCCCTGGTGTTCCTGACAGGTCTCTGCTCCCCCTTTA
ACCTGGATGAACATCACCCACGCCTATTCCCAGGGCCACCAGAAGCTGAATTTGGATACAGTGTCTTACA
ACATGTTGGGGGTGGACAGCGATGGATGCTGGTGGGCGCCCCCTGGGATGGGCCTTCAGGCGACCGGAGG
GGGGACGTTTATCGCTGCCCTGTAGGGGGGGCCCACAATGCCCCATGTGCCAAGGGCCACTTAGGTGACT
ACCAACTGGGAAATTCATCTCATCCTGCTGTGAATATGCACCTGGGGATGTCTCTGTTAGAGACAGATGG
TGATGGGGGATTCATGGCCTGTGCCCCTCTCTGGTCTCGTGCTTGTGGCAGCTCTGTCTTCAGTTCTGGG
ATATGTGCCCGTGTGGATGCTTCATTCCAGCCTCAGGGAAGCCTGGCACCCACTGCCCAACGCTGCCCAA
CATACATGGATGTTGTCATTGTCTTGGATGGCTCCAACAGCATCTACCCCTGGTCTGAAGTTCAGACCTT
CCTACGAAGACTGGTAGGGAAACTGTTTATTGACCCAGAACAGATACAGGTGGGACTGGTACAGTATGGG
GAGAGCCCTGTACATGAGTGGTCCCTGGGAGATTTCCGAACGAAGGAAGAAGTGGTGAGAGCAGCAAAGA
ACCTCAGTCGGCGGGAGGGACGAGAAACAAAGACTGCCCAAGCAATAATGGTGGCCTGCACAGAAGGGTT
CAGTCAGTCCCATGGGGGCCGACCCGAGGCTGCCAGGCTACTGGTGGTTGTCACTGATGGAGAGTCCCAT
GATGGAGAGGAGCTTCCTGCAGCACTAAAGGCCTGTGAGGCTGGAAGAGTGACACGCTATGGGATTGCAG
TCCTTGGTCACTACCTCCGGCGGCAGCGAGATCCCAGCTCTTTCCTGAGAGAAATTAGAACTATTGCCAG
TGATCCAGATGAGCGATTCTTCTTCAATGTCACAGATGAGGCTGCTCTGACTGACATTGTGGATGCACTA
GGAGATCGGATTTTTGGCCTTGAAGGGTCCCATGCAGAAAACGAAAGCTCCTTTGGGCTGGAAATGTCTC
AGATTGGTTTCTCCACTCATCGGCTAAAGGATGGGATTCTTTTTGGGATGGTGGGGGCCTATGACTGGGG
AGGCTCTGTGCTATGGCTTGAAGGAGGCCACCGCCTTTTCCCCCCACGAATGGCACTGGAAGACGAGTTC
CCCCCTGCATTGCAGAACCATGCAGCCTACCTGGGTTACTCTGTTTCTTCCATGCTTTTGCGGGGTGGAC
GCCGCCTGTTTCTCTCTGGGGCTCCTCGATTTAGACATCGAGGAAAAGTCATCGCCTTCCAGCTTAAGAA
AGATGGGGCTGTGAGGGTTGCCCAGAGCCTCCAGGGGGAGCAGATTGGTTCATACTTTGGCAGTGAGCTC
TGCCCATTGGATACAGATAGGGATGGAACAACTGATGTCTTACTTGTGGCTGCCCCCATGTTCCTGGGAC
CCCAGAACAAGGAAACAGGACGTGTTTATGTGTATCTGGTAGGCCAGCAGTCCTTGCTGACCCTCCAAGG
AACACTTCAGCCAGAACCCCCCCAGGATGCTCGGTTTGGCTTTGCCATGGGAGCTCTTCCTGATCTGAAC
CAAGATGGTTTTGCTGATGTGGCTGTGGGGGCGCCTCTGGAAGATGGGCACCAGGGAGCACTGTACCTGT
ACCATGGAACCCAGAGTGGAGTCAGGCCCCATCCTGCCCAGAGGATTGCTGCTGCCTCCATGCCACATGC
CCTCAGCTACTTTGGCCGAAGTGTGGATGGTCGGCTAGATCTGGATGGAGATGATCTGGTCGATGTGGCT
GTGGGTGCCCAGGGGGCAGCCATCCTGCTCAGCTCCCGGCCCATTGTCCATCTGACCCCATCACTGGAGG
TGACCCCACAGGCCATCAGTGTGGTTCAGAGGGACTGTAGGCGGCGAGGCCAAGAGGCAGTCTGTCTGAC
TGCAGCCCTTTGCTTCCAAGTGACCTCCCGTACTCCTGGTCGCTGGGATCACCAATTCTACATGAGGTTC
ACCGCATCACTGGATGAATGGACTGCTGGGGCACGTGCAGCATTTGATGGCTCTGGCCAGAGGTTGTCCC
CTCGGAGGCTCCGGCTCAGTGTGGGGAATGTCACTTGTGAGCAGCTACACTTCCATGTGCTGGATACATC
AGATTACCTCCGGCCAGTGGCCTTGACTGTGACCTTTGCCTTGGACAATACTACAAAGCCAGGGCCTGTG
CTGAATGAGGGCTCACCCACCTCTATACAAAAGCTGGTCCCCTTCTCAAAGGATTGTGGCCCTGACAATG
AATGTGTCACAGACCTGGTGCTTCAAGTGAATATGGACATCAGAGGCTCCAGGAAGGCCCCATTTGTGGT
TCGAGGTGGCCGGCGGAAAGTGCTGGTATCTACAACTCTGGAGAACAGAAAGGAAAATGCTTACAATACG
AGCCTGAGTCTCATCTTCTCTAGAAACCTCCACCTGGCCAGTCTCACTCCTCAGAGAGAGAGCCCAATAA
AGGTGGAATGTGCCGCCCCTTCTGCTCATGCCCGGCTCTGCAGTGTGGGGCATCCTGTCTTCCAGACTGG
AGCCAAGGTGACCTTTCTGCTAGAGTTTGAGTTTAGCTGCTCCTCTCTCCTGAGCCAGGTCTTCGTGAAG
CTGACTGCCAGCAGTGACAGCCTGGAGAGAAATGGGACCCTTCAAGATAACACAGCCCAGACCTCAGCCT
ACATCCAATATGAGCCCCACCTCCTGTTCTCTAGTGAGTCTACCCTGCACCGCTATGAGGTTCACCCATA
TGGGACCCTCCCAGTGGGTCCTGGCCCAGAATTCAAAACCACTCTCAGGGTTCAGAACCTAGGCTGCTAT
GTGGTCAGTGGCCTCATCATCTCAGCCCTCCTTCCAGCTGTGGCCCATGGGGGCAATTACTTCCTATCAC
TGTCTCAAGTCATCACTAACAATGCAAGCTGCATAGTGCAGAACCTGACTGAACCCCCAGGCCCACCTGT
GCATCCAGAGGAGCTTCAACACACAAACAGACTGAATGGGAGCAATACTCAGTGTCAGGTGGTGAGGTGC
CACCTTGGGCAGCTGGCAAAGGGGACTGAGGTCTCTGTTGGACTATTGAGGCTGGTTCACAATGAATTTT
TCCGAAGAGCCAAGTTCAAGTCCCTGACGGTGGTCAGCACCTTTGAGCTGGGAACCGAAGAGGGCAGTGT
CCTACAGCTGACTGAAGCCTCCCGTTGGAGTGAGAGCCTCTTGGAGGTGGTTCAGACCCGGCCTATCCTC
ATCTCCCTGTGGATCCTCATAGGCAGTGTCCTGGGAGGGTTGCTCCTGCTTGCTCTCCTTGTCTTCTGCC
TGTGGAAGCTTGGCTTCTTTGCCCATAAGAAAATCCCTGAGGAAGAAAAAAGAGAAGAGAAGTTGGAGCA
ATGA

Translation (1167 aa):
MELPFVTHLFLPLVFLTGLCSPFNLDEHHPRLFPGPPEAEFGYSVLQHVGGGQRWMLVGAPWDGPSGDRR
GDVYRCPVGGAHNAPCAKGHLGDYQLGNSSHPAVNMHLGMSLLETDGDGGFMACAPLWSRACGSSVFSSG
ICARVDASFQPQGSLAPTAQRCPTYMDVVIVLDGSNSIYPWSEVQTFLRRLVGKLFIDPEQIQVGLVQYG
ESPVHEWSLGDFRTKEEVVRAAKNLSRREGRETKTAQAIMVACTEGFSQSHGGRPEAARLLVVVTDGESH
DGEELPAALKACEAGRVTRYGIAVLGHYLRRQRDPSSFLREIRTIASDPDERFFFNVTDEAALTDIVDAL
GDRIFGLEGSHAENESSFGLEMSQIGFSTHRLKDGILFGMVGAYDWGGSVLWLEGGHRLFPPRMALEDEF
PPALQNHAAYLGYSVSSMLLRGGRRLFLSGAPRFRHRGKVIAFQLKKDGAVRVAQSLQGEQIGSYFGSEL
CPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYLVGQQSLLTLQGTLQPEPPQDARFGFAMGALPDLN
QDGFADVAVGAPLEDGHQGALYLYHGTQSGVRPHPAQRIAAASMPHALSYFGRSVDGRLDLDGDDLVDVA
VGAQGAAILLSSRPIVHLTPSLEVTPQAISVVQRDCRRRGQEAVCLTAALCFQVTSRTPGRWDHQFYMRF
TASLDEWTAGARAAFDGSGQRLSPRRLRLSVGNVTCEQLHFHVLDTSDYLRPVALTVTFALDNTTKPGPV
LNEGSPTSIQKLVPFSKDCGPDNECVTDLVLQVNMDIRGSRKAPFVVRGGRRKVLVSTTLENRKENAYNT
SLSLIFSRNLHLASLTPQRESPIKVECAAPSAHARLCSVGHPVFQTGAKVTFLLEFEFSCSSLLSQVFVK
LTASSDSLERNGTLQDNTAQTSAYIQYEPHLLFSSESTLHRYEVHPYGTLPVGPGPEFKTTLRVQNLGCY
VVSGLIISALLPAVAHGGNYFLSLSQVITNNASCIVQNLTEPPGPPVHPEELQHTNRLNGSNTQCQVVRC
HLGQLAKGTEVSVGLLRLVHNEFFRRAKFKSLTVVSTFELGTEEGSVLQLTEASRWSESLLEVVQTRPIL
ISLWILIGSVLGGLLLLALLVFCLWKLGFFAHKKIPEEEKREEKLEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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