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Report for CCDS73494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73494.1 Public Homo sapiens 12 CPSF6 24 110 108 CCDS HistoryNCBI Gene:11052Re-query CCDS DB by CCDS ID:73494.1Re-query CCDS DB by GeneID:11052See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266679.8 ENSP00000266679.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000266679.8Link to Ensembl Protein Viewer:ENSP00000266679.8Re-query CCDS DB by Nucleotide ID:ENST00000266679Re-query CCDS DB by Protein ID:ENSP00000266679
Original member Current member NCBI NM_001300947.2 NP_001287876.1 Accepted alive Link to Nucleotide Sequence:NM_001300947.2Link to Protein Sequence:NP_001287876.1Re-query CCDS DB by Nucleotide ID:NM_001300947Re-query CCDS DB by Protein ID:NP_001287876Link to BLAST:NP_001287876.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287876.1 588 Q16630-2 588 100% 0 0

Chromosomal Locations for CCDS 73494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 69239647 69239706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69251129 69251338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69253051 69253154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69256697 69256842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69257732 69257905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69258035 69258145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69258590 69259094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69259428 69259543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69260044 69260197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 69262373 69262559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGGCGGACGGCGTGGACCACATAGACATTTACGCGGATGTCGGCGAAGAGTTCAACCAGGAAGCTGAAT
ATGGTGGGCATGATCAGATAGATTTGTATGACGATGTCATATCTCCATCTGCAAATAATGGAGATGCCCC
AGAAGACCGAGATTACATGGATACTCTCCCACCAACTGTTGGTGATGATGTGGGTAAAGGAGCAGCACCA
AATGTTGTCTATACATATACTGGAAAGAGAATTGCATTATATATTGGAAATCTAACATGGTGGACAACAG
ATGAAGACTTAACTGAAGCAGTTCATTCTTTGGGAGTAAATGATATTTTGGAGATAAAATTTTTTGAAAA
TCGGGCAAATGGCCAGTCAAAGGGGTTTGCCCTTGTTGGTGTTGGATCTGAAGCATCTTCAAAAAAGTTA
ATGGATCTGTTACCTAAAAGAGAACTTCATGGTCAGAATCCTGTTGTAACTCCATGCAATAAACAGTTCC
TGAGTCAATTTGAAATGCAGTCCAGGAAAACTACACAATCAGGACAAATGTCTGGGGAAGGTAAAGCTGG
TCCTCCAGGAGGCAGTTCCCGTGCAGCATTTCCACAAGGTGGTAGAGGACGGGGCCGTTTTCCAGGGGCT
GTTCCTGGTGGGGACAGATTTCCTGGGCCAGCAGGACCAGGAGGGCCACCCCCACCTTTTCCAGGAAATT
TGATCAAGCATCTTGTTAAAGGAACTCGGCCTTTGTTCCTGGAAACTAGGATTCCATGGCATATGGGGCA
CAGCATAGAGGAAATACCCATTTTTGGCCTAAAAGCTGGACAGACTCCACCACGTCCACCCTTAGGTCCT
CCAGGCCCACCTGGTCCACCAGGTCCTCCACCTCCTGGTCAGGTTCTGCCTCCTCCTCTAGCTGGGCCTC
CTAATCGAGGAGATCGCCCTCCACCACCAGTTCTTTTTCCTGGACAACCTTTTGGGCAGCCTCCATTGGG
TCCACTTCCTCCTGGCCCTCCACCTCCAGTTCCAGGCTACGGCCCCCCTCCTGGCCCACCACCTCCACAA
CAGGGACCACCTCCACCTCCAGGCCCCTTTCCACCTCGTCCACCCGGTCCACTTGGGCCACCCCTTACAC
TAGCTCCTCCTCCGCATCTTCCTGGACCACCTCCAGGTGCCCCACCGCCAGCTCCGCATGTGAACCCAGC
TTTCTTTCCTCCACCAACTAACAGTGGCATGCCTACATCAGATAGCCGAGGTCCACCACCAACAGATCCA
TATGGGCGACCTCCACCATATGATAGGGGTGACTATGGCCCCCCTGGAAGGGAAATGGATACTGCAAGAA
CGCCATTGAGTGAAGCTGAATTTGAAGAAATCATGAATAGAAATAGGGCAATCTCAAGCAGTGCTATTTC
GAGAGCTGTGTCTGATGCCAGTGCTGGTGATTATGGGAGTGCTATTGAGACACTGGTAACTGCAATTTCT
TTAATTAAACAATCCAAAGTATCTGCTGATGATCGTTGCAAAGTTCTTATTAGTTCTTTGCAAGATTGCC
TTCATGGAATTGAGTCCAAGTCTTATGGTTCTGGATCAAGACGTGAACGATCAAGAGAGAGGGACCATAG
TAGATCACGAGAAAAGAGTCGACGTCATAAATCCCGTAGTAGAGACCGTCATGACGATTATTACAGAGAG
AGAAGCAGAGAACGAGAGAGGCACCGGGATCGTGACCGAGACCGTGACCGAGAGCGTGACCGAGAGCGCG
AATATCGTCATCGTTAG

Translation (588 aa):
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDTLPPTVGDDVGKGAAP
NVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKL
MDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGA
VPGGDRFPGPAGPGGPPPPFPGNLIKHLVKGTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGP
PGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQ
QGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDTARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLVTAIS
LIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRERSRERDHSRSREKSRRHKSRSRDRHDDYYRE
RSRERERHRDRDRDRDRERDREREYRHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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