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Report for CCDS74304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74304.1 Public Homo sapiens 19 HSH2D 24 110 108 CCDS HistoryNCBI Gene:84941Re-query CCDS DB by CCDS ID:74304.1Re-query CCDS DB by GeneID:84941See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74304.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616645.4 ENSP00000482604.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616645.4Link to Ensembl Protein Viewer:ENSP00000482604.1Re-query CCDS DB by Nucleotide ID:ENST00000616645Re-query CCDS DB by Protein ID:ENSP00000482604
Original member Current member EBI ENST00000613986.4 ENSP00000483354.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000613986.4Link to Ensembl Protein Viewer:ENSP00000483354.1Re-query CCDS DB by Nucleotide ID:ENST00000613986Re-query CCDS DB by Protein ID:ENSP00000483354
Original member Current member NCBI NM_001382417.1 NP_001369346.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382417.1Link to Protein Sequence:NP_001369346.1Re-query CCDS DB by Nucleotide ID:NM_001382417Re-query CCDS DB by Protein ID:NP_001369346Link to BLAST:NP_001369346.1
Original member Current member NCBI NM_032855.4 NP_116244.1 Accepted alive Link to Nucleotide Sequence:NM_032855.4Link to Protein Sequence:NP_116244.1Re-query CCDS DB by Nucleotide ID:NM_032855Re-query CCDS DB by Protein ID:NP_116244Link to BLAST:NP_116244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369346.1 352 Q96JZ2-1 352 100% 0 0
NP_116244.1 352 Q96JZ2-1 352 100% 0 0

Chromosomal Locations for CCDS 74304.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16148751 16148875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16152552 16152641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16153043 16153208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16154399 16154491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16157210 16157794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGACAGAGGCCGGGAAGCTGCCCCTACCGCTACCCCCACGGCTGGACTGGTTTGTGCACACCCAGATGG
GCCAGCTGGCCCAAGACGGGGTCCCCGAGTGGTTCCATGGTGCAATCTCAAGAGAGGATGCTGAGAACTT
GCTGGAGTCACAGCCACTGGGATCCTTTCTCATCAGGGTCAGTCACAGCCATGTGGGCTACACACTCTCC
TACAAAGCCCAAAGCAGCTGCTGCCATTTCATGGTGAAGCTCTTGGATGATGGGACTTTCATGATCCCCG
GGGAGAAGGTGGCCCACACCTCGCTGGACGCCCTGGTCACCTTCCACCAGCAGAAGCCAATTGAGCCGCG
CAGGGAGCTGCTGACACAGCCCTGCAGGCAGAAGGATCCCGCAAACGTGGATTACGAGGATCTCTTCCTC
TACTCCAACGCAGTGGCCGAGGAAGCTGCCTGCCCGGTGTCTGCCCCTGAGGAGGCCTCCCCAAAGCCAG
TCCTGTGTCACCAATCAAAGGAAAGGAAGCCGTCAGCAGAGATGAACAGAATAACCACCAAGGAAGCCAC
TTCCTCCTGCCCCCCAAAATCCCCTCTTGGAGAGACCCGCCAGAAACTCTGGAGGAGCCTCAAAATGCTC
CCCGAGAGAGGCCAGAGGGTCCGGCAGCAGCTAAAAAGCCACCTCGCCACTGTGAACTTGTCGTCACTCT
TGGATGTCCGGAGATCCACGGTGATCTCAGGCCCTGGGACCGGAAAAGGCAGCCAAGATCACTCAGGGGA
TCCCACCTCGGGGGACAGAGGCTACACGGATCCCTGTGTGGCCACATCTCTCAAAAGCCCCTCACAGCCC
CAGGCACCAAAAGACAGAAAGGTCCCCACCAGGAAGGCCGAGAGGTCGGTCAGCTGCATTGAGGTGACCC
CAGGGGACAGGAGTTGGCACCAAATGGTAGTGAGAGCCCTATCCTCCCAGGAGTCCAAGCCAGAGCACCA
GGGCTTGGCAGAGCCTGAGAACGACCAGCTCCCGGAGGAGTACCAACAACCGCCACCCTTTGCCCCTGGG
TACTGCTAG

Translation (352 aa):
MTEAGKLPLPLPPRLDWFVHTQMGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLS
YKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDPANVDYEDLFL
YSNAVAEEAACPVSAPEEASPKPVLCHQSKERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKML
PERGQRVRQQLKSHLATVNLSSLLDVRRSTVISGPGTGKGSQDHSGDPTSGDRGYTDPCVATSLKSPSQP
QAPKDRKVPTRKAERSVSCIEVTPGDRSWHQMVVRALSSQESKPEHQGLAEPENDQLPEEYQQPPPFAPG
YC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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