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Report for CCDS74622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74622.1 Public Homo sapiens 2 SPATS2L 24 110 108 CCDS HistoryNCBI Gene:26010Re-query CCDS DB by CCDS ID:74622.1Re-query CCDS DB by GeneID:26010See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409385.5 ENSP00000386391.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409385.5Link to Ensembl Protein Viewer:ENSP00000386391.1Re-query CCDS DB by Nucleotide ID:ENST00000409385Re-query CCDS DB by Protein ID:ENSP00000386391
Original member Current member NCBI NM_001282743.1 NP_001269672.1 Accepted alive Link to Nucleotide Sequence:NM_001282743.1Link to Protein Sequence:NP_001269672.1Re-query CCDS DB by Nucleotide ID:NM_001282743Re-query CCDS DB by Protein ID:NP_001269672Link to BLAST:NP_001269672.1

Chromosomal Locations for CCDS 74622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 200416411 200416428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200419250 200419496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200439122 200439328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200440649 200440784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200459769 200459827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200467290 200467399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200469914 200470016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200472832 200473052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 200477636 200478031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGACAGGAAAAAAGAAGAACAATAAAAGAAAAAGAAGCAAGTCCAAGCAGCATCAAGGCAACAAAGATG
CTAAAGACAAGGTGGAGAGGCCTGAGGCAGGGCCCCTGCAGCCGCAGCCACCACAGATTCAAAACGGCCC
CATGAATGGCTGCGAGAAGGACAGCTCGTCCACAGATTCTGCTAACGAAAAACCAGCCCTTATCCCTCGT
GAGAAAAAGATCTCGATACTTGAGGAACCTTCAAAGGCACTTCGTGGGGTCACAGAAGGCAACAGACTAC
TGCAACAGAAACTATCCTTAGATGGGAACCCCAAACCTATACATGGAACAACAGAGAGGTCAGATGGCCT
ACAGTGGTCAGCTGAGCAGCCTTGTAACCCAAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAAT
ACCCCTGCAGCTCATCTTGAAATAAAGCCAGATGAGTTGGCAAAGAAAAGAGGCCCAAATATTGAGAAAT
CAGTGAAGGATTTGCAACGCTGCACCGTTTCTCTAACTAGATATCGCGTCATGATTAAGGAAGAAGTGGA
TAGTTCCGTGAAGAAGATCAAAGCTGCCTTTGCTGAATTACACAACTGCATCATTGACAAAGAAGTTTCA
TTAATGGCAGAAATGGATAAAGTTAAAGAAGAAGCCATGGAAATCCTGACTGCTCGTCAGAAGAAAGCAG
AAGAACTAAAGAGACTCACTGACCTTGCCAGTCAGATGGCAGAGATGCAGCTGGCCGAACTCAGGGCAGA
AATTAAGCACTTTGTCAGCGAGCGTAAATATGACGAGGAGCTCGGGAAAGCTGCCCGGTTTTCCTGTGAC
ATCGAACAGCTGAAGGCCCAAATCATGCTCTGCGGAGAAATTACACATCCAAAGAACAACTATTCCTCAA
GAACTCCCTGCAGCTCCCTGCTGCCTCTGCTGAATGCGCACGCAGCAACCTCTGGGAAACAGAGTAACTT
TTCCCGAAAATCATCCACTCACAATAAGCCCTCTGAAGGCAAAGCGGCAAACCCCAAAATGGTGAGCAGT
CTCCCCAGCACCGCCGACCCCTCTCACCAGACCATGCCGGCCAACAAGCAGAATGGATCTTCTAACCAAA
GACGGAGATTTAATCCACAGTATCATAACAACAGGCTAAATGGGCCTGCCAAGTCGCAGGGCAGTGGGAA
TGAAGCCGAGCCACTGGGAAAGGGCAACAGCCGCCACGAACACAGAAGACAGCCGCACAACGGCTTCCGG
CCCAAAAACAAAGGCGGTGCCAAAAATCAAGAGGCTTCCTTGGGGATGAAGACCCCCGAGGCCCCGGCCC
ATTCTGAAAAGCCCCGGCGAAGGCAGCACGCTGCAGACACCTCGGAGGCCAGGCCCTTCCGGGGTAGTGT
CGGTAGGGTTTCACAGTGCAATCTCTGCCCCACGAGAATAGAAGTTTCCACAGATGCAGCAGTTCTCTCA
GTCCCGGCTGTGACGTTGGTGGCCTGA

Translation (498 aa):
MTGKKKNNKRKRSKSKQHQGNKDAKDKVERPEAGPLQPQPPQIQNGPMNGCEKDSSSTDSANEKPALIPR
EKKISILEEPSKALRGVTEGNRLLQQKLSLDGNPKPIHGTTERSDGLQWSAEQPCNPSKPKAKTSPVKSN
TPAAHLEIKPDELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVS
LMAEMDKVKEEAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCD
IEQLKAQIMLCGEITHPKNNYSSRTPCSSLLPLLNAHAATSGKQSNFSRKSSTHNKPSEGKAANPKMVSS
LPSTADPSHQTMPANKQNGSSNQRRRFNPQYHNNRLNGPAKSQGSGNEAEPLGKGNSRHEHRRQPHNGFR
PKNKGGAKNQEASLGMKTPEAPAHSEKPRRRQHAADTSEARPFRGSVGRVSQCNLCPTRIEVSTDAAVLS
VPAVTLVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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