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Report for CCDS75308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75308.1 Public Homo sapiens 5 SMAD5 24 110 108 CCDS HistoryNCBI Gene:4090Re-query CCDS DB by CCDS ID:75308.1Re-query CCDS DB by GeneID:4090See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509297.6 ENSP00000426696.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509297.6Link to Ensembl Protein Viewer:ENSP00000426696.2Re-query CCDS DB by Nucleotide ID:ENST00000509297Re-query CCDS DB by Protein ID:ENSP00000426696
Original member Current member EBI ENST00000545279.6 ENSP00000441954.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000545279.6Link to Ensembl Protein Viewer:ENSP00000441954.2Re-query CCDS DB by Nucleotide ID:ENST00000545279Re-query CCDS DB by Protein ID:ENSP00000441954
Original member Current member EBI ENST00000545620.5 ENSP00000446474.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545620.5Link to Ensembl Protein Viewer:ENSP00000446474.2Re-query CCDS DB by Nucleotide ID:ENST00000545620Re-query CCDS DB by Protein ID:ENSP00000446474
Original member Current member NCBI NM_001001419.3 NP_001001419.1 Accepted alive Link to Nucleotide Sequence:NM_001001419.3Link to Protein Sequence:NP_001001419.1Re-query CCDS DB by Nucleotide ID:NM_001001419Re-query CCDS DB by Protein ID:NP_001001419Link to BLAST:NP_001001419.1
Original member Current member NCBI NM_001001420.3 NP_001001420.1 Accepted alive Link to Nucleotide Sequence:NM_001001420.3Link to Protein Sequence:NP_001001420.1Re-query CCDS DB by Nucleotide ID:NM_001001420Re-query CCDS DB by Protein ID:NP_001001420Link to BLAST:NP_001001420.1
Original member Current member NCBI NM_005903.7 NP_005894.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005903.7Link to Protein Sequence:NP_005894.3Re-query CCDS DB by Nucleotide ID:NM_005903Re-query CCDS DB by Protein ID:NP_005894Link to BLAST:NP_005894.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001419.1 465 Q99717 465 100% 0 0
NP_001001420.1 465 Q99717 465 100% 0 0
NP_005894.3 465 Q99717 465 100% 0 0

Chromosomal Locations for CCDS 75308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136153761 136154163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136160856 136161107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136163272 136163391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136172434 136172655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136174376 136174632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136177337 136177480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGACGTCAATGGCCAGCTTGTTTTCTTTTACTAGTCCAGCAGTAAAGCGATTGTTGGGCTGGAAACAAG
GTGATGAGGAGGAGAAATGGGCAGAAAAGGCAGTTGATGCTTTGGTGAAGAAACTAAAAAAGAAAAAGGG
TGCCATGGAGGAACTGGAGAAAGCCTTGAGCAGTCCAGGACAGCCGAGTAAATGTGTCACTATTCCCAGA
TCTTTAGATGGACGCCTGCAGGTTTCTCACAGAAAAGGCTTACCCCATGTTATATATTGTCGTGTTTGGC
GCTGGCCGGATTTGCAGAGTCATCATGAGCTAAAGCCGTTGGATATTTGTGAATTTCCTTTTGGATCTAA
GCAAAAAGAAGTTTGTATCAACCCATACCACTATAAGAGAGTGGAGAGTCCAGTCTTACCTCCAGTATTA
GTGCCTCGTCATAATGAATTCAATCCACAACACAGCCTTCTGGTTCAGTTTAGGAACCTGAGCCACAATG
AACCACACATGCCACAAAATGCCACGTTTCCAGATTCTTTCCACCAGCCCAACAACACTCCTTTTCCCTT
ATCTCCAAACAGCCCTTATCCCCCTTCTCCTGCTAGCAGCACATATCCCAACTCCCCAGCAAGTTCTGGA
CCAGGAAGTCCATTTCAGCTCCCAGCTGATACGCCTCCTCCTGCCTATATGCCACCTGATGATCAGATGG
GTCAAGATAATTCCCAGCCTATGGATACAAGCAATAATATGATTCCTCAGATTATGCCCAGTATATCCAG
CAGGGATGTTCAGCCTGTTGCCTATGAAGAGCCTAAACATTGGTGTTCAATAGTCTACTATGAATTAAAC
AATCGTGTTGGAGAAGCTTTTCATGCATCTTCTACTAGTGTGTTAGTAGATGGATTCACAGATCCTTCAA
ATAACAAAAGTAGATTCTGCTTGGGTTTGTTGTCAAATGTTAATCGTAATTCGACAATTGAAAACACTAG
GCGACATATTGGAAAAGGTGTTCATCTGTACTATGTTGGTGGAGAGGTGTATGCGGAATGCCTCAGTGAC
AGCAGCATATTTGTACAGAGTAGGAACTGCAACTTTCATCATGGCTTTCATCCCACCACTGTCTGTAAGA
TTCCCAGCAGCTGCAGCCTCAAAATTTTTAACAATCAGGAGTTTGCTCAGCTTCTGGCTCAATCTGTCAA
CCATGGGTTTGAGGCAGTATATGAGCTCACCAAAATGTGTACCATTCGGATGAGTTTTGTCAAGGGTTGG
GGAGCAGAATATCACCGGCAGGATGTAACCAGCACCCCATGTTGGATTGAGATTCATCTTCATGGGCCTC
TTCAGTGGCTGGATAAAGTCCTTACTCAGATGGGCTCCCCTCTGAACCCCATATCTTCTGTTTCATAA

Translation (465 aa):
MTSMASLFSFTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSSPGQPSKCVTIPR
SLDGRLQVSHRKGLPHVIYCRVWRWPDLQSHHELKPLDICEFPFGSKQKEVCINPYHYKRVESPVLPPVL
VPRHNEFNPQHSLLVQFRNLSHNEPHMPQNATFPDSFHQPNNTPFPLSPNSPYPPSPASSTYPNSPASSG
PGSPFQLPADTPPPAYMPPDDQMGQDNSQPMDTSNNMIPQIMPSISSRDVQPVAYEEPKHWCSIVYYELN
NRVGEAFHASSTSVLVDGFTDPSNNKSRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSD
SSIFVQSRNCNFHHGFHPTTVCKIPSSCSLKIFNNQEFAQLLAQSVNHGFEAVYELTKMCTIRMSFVKGW
GAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSPLNPISSVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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