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Report for CCDS75352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75352.1 Public Homo sapiens 5 JAKMIP2 24 110 108 CCDS HistoryNCBI Gene:9832Re-query CCDS DB by CCDS ID:75352.1Re-query CCDS DB by GeneID:9832See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616793.5 ENSP00000479248.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000616793.5Link to Ensembl Protein Viewer:ENSP00000479248.1Re-query CCDS DB by Nucleotide ID:ENST00000616793Re-query CCDS DB by Protein ID:ENSP00000479248
Original member Current member NCBI NM_001270941.2 NP_001257870.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270941.2Link to Protein Sequence:NP_001257870.1Re-query CCDS DB by Nucleotide ID:NM_001270941Re-query CCDS DB by Protein ID:NP_001257870Link to BLAST:NP_001257870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257870.1 820 Q96AA8-3 820 100% 0 0

Chromosomal Locations for CCDS 75352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147601761 147601811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147612306 147612371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147617911 147618114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147620666 147620743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147623621 147623689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147628751 147628816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147629693 147629746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147631413 147631511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147632680 147632778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147636222 147636284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147636965 147637048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147639632 147639760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147640704 147640823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147641708 147641764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147644058 147644198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147644850 147644996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147648376 147648474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147650338 147650547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147660948 147661445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147671678 147671806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGTCCAAGAAAGGGCGAAATAAGGGCGAGAAGCCCGAGGCACTCATTGTTGCCCTTCAAGCTGCCAATG
AAGACCTCAGGACCAAGCTCACAGACATTCAGATAGAGCTGCATCAAGAGAAGTCCAAGGTATCAAAGCT
TGAAAGAGAGAAGACTCAAGAAGCGAAGAGGATTCGTGAGCTGGAGCAGCGCAAGCACACGGTGCTGGTG
ACAGAACTCAAAGCCAAGCTCCATGAGGAGAAGATGAAGGAGCTGCAGGCTGTGAGGGAGAACCTTATCA
AGCAGCACGAGCAGGAAATGTCAAGGACGGTGAAGGTACGTGATGGAGAGATCCAGAGGCTCAAGTCTGC
TCTCTGTGCTCTCCGCGACGGCAGCAGTGACAAAGTAAGGACAGCGCTCACCATTGAGGCCCGGGAGGAG
GCCCGGAAACTGTTTGACACAGAGCGCCTTAAGCTCTTACAGGAAATTGCGGACCTGAAAACGGCCAAGA
AGCAGGTGGACGAGGCTCTGAGCAATATGATCCAAGCAGATAAAATCAAGGCTGGGGACCTTCGGAGTGA
GCATCAGTCCCACCAAGAAGCCATCTCGAAGATCAAGTGGGAGTCGGAGCGGGATATTCGGAGGCTGATG
GATGAAATCAAAGCCAAGGACAGGATCATCTTTTCCCTGGAAAAGGAACTGGAGACCCAGACAGGCTATG
TACAGAAACTCCAACTTCAGAAGGAGGCTTTGGACGAACAACTCTTTCTGGTCAAGGAGGCTGAGTGCAA
CATGAGCAGCCCAAAACGAGAAATTCCAGGAAGGGCAGGTGATGGTTCCGAACACTGCAGCAGTCCTGAT
TTGCGAAGAAATCAAAAGAGAATAGCTGAATTGAATGCCACTATAAGAAAATTAGAAGACAGGAATACCT
TGCTTGGAGATGAACGAAATGAACTGTTAAAACGTGTGCGGGAAACCGAAAAGCAATGTAAACCTCTCCT
GGAAAGGAACAAGTGCCTCGCCAAGAGAAACGATGAACTGATGGTGTCCTTGCAGCGCATGGAAGAAAAA
CTAAAAGCCGTTACCAAGGAAAATTCAGAAATGAGAGAAAAAATAACATCCCATCCACCCCTGAAGAAAT
TAAAATCTCTGAATGACCTCGACCAAGCTAATGAAGAACAAGAAACAGAGTTTCTAAAACTTCAGGTCAT
TGAGCAACAGAACATTATTGATGAGCTCACAAGGGACCGAGAAAAGCTCATCCGTAGAAGAAAGCATAGA
AGAAGTTCCAAGCCAATTAAGAGGCCTGTTTTGGACCCGTTTATTGGCTATGATGAGGACTCTATGGATT
CAGAGACATCATCCATGGCCTCATTTAGAACAGACAGAACACCAGCTACTCCTGATGATGACTTGGATGA
AAGTTTAGCAGCTGAAGAATCTGAACTAAGATTTCGACAATTAACAAAAGAATATCAGGCCCTCCAAAGA
GCATATGCCCTCCTACAGGAGCAGACGGGAGGCATCATCGACGCTGAACGAGAAGCCAAGGCTCAAGAAC
AGCTCCAAGCAGAGGTGCTAAGGTATAAAGCCAAAATTGAAGACCTGGAAGCGACTCTGGCTCAGAAAGG
GCAGGATTCACACTGGGTAGAAGATAAACAACTTTTCATTAAGAGAAACCAGGAGCTTTTAGAAAAGATA
GAAAAACAGGAGGCAGAAAATCACCGGTTACAACAAGAACTACAGGACGCCAGAGACCAGAATGAGCTGC
TGGAGTTTCGAAACCTAGAGCTAGAAGAGAGAGAGAGACGATCCCCTCCATTTAATCTCCAAATTCACCC
ATTCTCAGATGGTGTGAGTGCTCTACAGATCTACTGTATGAAAGAAGGTGTTAAGGATGTGAACATCCCT
GATCTCATAAAGCAGCTTGATATCTTGGGTGATAATGGGAATTTAAGAAATGAAGAACAAGTGGCCATAA
TTCAGGCCAGCACTGTGCTGTCCCTGGCAGAGAAGTGGATCCAGCAGATTGAAGGAGCTGAGGCTGCCCT
ACACCAGAAAATGATGGAATTGGAAAGTGACATGGAACAGTTCTGCAAAATAAAAGGCTATCTGGAGGAA
GAACTAGACTACAGAAAACAAGCTCTTGACCAAGCATATATGAGAATCCAGGAACTAGAAGCTACTTTGT
ACAATGCTCTACAGCAAGAAACTGTTATCAAGTTTGGTGAATTATTAAGTGAAAAACAGCAAGAGGAGCT
GAGGACGGCAGTAGAAAAGTTACGGCGGCAAATGCTGAGGAAGAGCAGAGAGTATGACTGTCAGATTCTT
CAGGAGAGAATGGAGCTCTTACAGCAAGCCCATCAGAGAATTCGTGACTTAGAAGATAAAACAGACATCC
AGAAAAGACAAATAAAAGACTTAGAAGAAAAGTTTCTGTTTCTATTCTTGTTCTTCTCTCTTGCCTTTAT
TCTATGGCCTTGA

Translation (820 aa):
MSKKGRNKGEKPEALIVALQAANEDLRTKLTDIQIELHQEKSKVSKLEREKTQEAKRIRELEQRKHTVLV
TELKAKLHEEKMKELQAVRENLIKQHEQEMSRTVKVRDGEIQRLKSALCALRDGSSDKVRTALTIEAREE
ARKLFDTERLKLLQEIADLKTAKKQVDEALSNMIQADKIKAGDLRSEHQSHQEAISKIKWESERDIRRLM
DEIKAKDRIIFSLEKELETQTGYVQKLQLQKEALDEQLFLVKEAECNMSSPKREIPGRAGDGSEHCSSPD
LRRNQKRIAELNATIRKLEDRNTLLGDERNELLKRVRETEKQCKPLLERNKCLAKRNDELMVSLQRMEEK
LKAVTKENSEMREKITSHPPLKKLKSLNDLDQANEEQETEFLKLQVIEQQNIIDELTRDREKLIRRRKHR
RSSKPIKRPVLDPFIGYDEDSMDSETSSMASFRTDRTPATPDDDLDESLAAEESELRFRQLTKEYQALQR
AYALLQEQTGGIIDAEREAKAQEQLQAEVLRYKAKIEDLEATLAQKGQDSHWVEDKQLFIKRNQELLEKI
EKQEAENHRLQQELQDARDQNELLEFRNLELEERERRSPPFNLQIHPFSDGVSALQIYCMKEGVKDVNIP
DLIKQLDILGDNGNLRNEEQVAIIQASTVLSLAEKWIQQIEGAEAALHQKMMELESDMEQFCKIKGYLEE
ELDYRKQALDQAYMRIQELEATLYNALQQETVIKFGELLSEKQQEELRTAVEKLRRQMLRKSREYDCQIL
QERMELLQQAHQRIRDLEDKTDIQKRQIKDLEEKFLFLFLFFSLAFILWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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