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Report for CCDS75500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75500.1 Public Homo sapiens 6 SCML4 24 110 108 CCDS HistoryNCBI Gene:256380Re-query CCDS DB by CCDS ID:75500.1Re-query CCDS DB by GeneID:256380See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369025.6 ENSP00000358021.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369025.6Link to Ensembl Protein Viewer:ENSP00000358021.2Re-query CCDS DB by Nucleotide ID:ENST00000369025Re-query CCDS DB by Protein ID:ENSP00000358021
Original member Current member NCBI NM_001286409.2 NP_001273338.1 Accepted alive Link to Nucleotide Sequence:NM_001286409.2Link to Protein Sequence:NP_001273338.1Re-query CCDS DB by Nucleotide ID:NM_001286409Re-query CCDS DB by Protein ID:NP_001273338Link to BLAST:NP_001273338.1

Chromosomal Locations for CCDS 75500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107705200 107705325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107707866 107708011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107720703 107720949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGAACCGCTACAGCGTGGACACCTCCGCCTCCACCTTTAACCACAGGGGCTCCTTGCACCCCTCCTCCT
CGCTGTACTGCAAGAGGCAGAACTCTGGAGACAGCCACCTTGGGGGTGGTCCTGCTGCCACCGCTGGTGG
TCCCCGCACTAGCCCCATGTCTTCTGGTGGCCCCTCGGCACCTGGGCTGAGGCCTCCAGCCTCCAGCCCC
AAGAGAAACACGACCTCTCTTGAAGGAAACAGATGTGCCTCAAGCCCTTCTCAGGATGCGCAGGATGCCA
GGCGGCCACGGAGCAGGAACCCCTCCGCCTGGACTGTGGAGGACGTGGTGTGGTTTGTGAAGGACGCCGA
CCCACAGGCTCTGGGGCCTCACGTGGAGCTCTTCAGAAAGCACGAGATTGATGGCAACGCTCTGCTGTTG
CTGAAGAGTGACATGGTCATGAAGTACCTGGGCCTGAAGCTGGGACCTGCACTGAAACTCTGCTACCACA
TTGACAAACTGAAGCAAGCCAAGTTCTGA

Translation (172 aa):
MNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSP
KRNTTSLEGNRCASSPSQDAQDARRPRSRNPSAWTVEDVVWFVKDADPQALGPHVELFRKHEIDGNALLL
LKSDMVMKYLGLKLGPALKLCYHIDKLKQAKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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