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Report for CCDS75514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75514.1 Public Homo sapiens 6 TPD52L1 24 110 108 CCDS HistoryNCBI Gene:7164Re-query CCDS DB by CCDS ID:75514.1Re-query CCDS DB by GeneID:7164See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75514.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392482.6 ENSP00000376273.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392482.6Link to Ensembl Protein Viewer:ENSP00000376273.2Re-query CCDS DB by Nucleotide ID:ENST00000392482Re-query CCDS DB by Protein ID:ENSP00000376273
Original member Current member EBI ENST00000534199.5 ENSP00000432590.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534199.5Link to Ensembl Protein Viewer:ENSP00000432590.1Re-query CCDS DB by Nucleotide ID:ENST00000534199Re-query CCDS DB by Protein ID:ENSP00000432590
Original member Current member EBI ENST00000524679.1 ENSP00000432787.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524679.1Link to Ensembl Protein Viewer:ENSP00000432787.1Re-query CCDS DB by Nucleotide ID:ENST00000524679Re-query CCDS DB by Protein ID:ENSP00000432787
Original member Current member NCBI NM_001292026.3 NP_001278955.1 Accepted alive Link to Nucleotide Sequence:NM_001292026.3Link to Protein Sequence:NP_001278955.1Re-query CCDS DB by Nucleotide ID:NM_001292026Re-query CCDS DB by Protein ID:NP_001278955Link to BLAST:NP_001278955.1
Original member Current member NCBI NM_001318907.2 NP_001305836.1 Accepted alive Link to Nucleotide Sequence:NM_001318907.2Link to Protein Sequence:NP_001305836.1Re-query CCDS DB by Nucleotide ID:NM_001318907Re-query CCDS DB by Protein ID:NP_001305836Link to BLAST:NP_001305836.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278955.1 102 Q16890-4 102 100% 0 0
NP_001305836.1 102 Q16890-4 102 100% 0 0

Chromosomal Locations for CCDS 75514.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125220146 125220193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125229118 125229266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125248282 125248383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125262834 125262843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGCTCTCTGAGGAGGAAAAGGAAGAGTTAAAAGCAGAGTTAGTTCAGCTAGAAGACGAAATTACAACAC
TACGACAAGTTTTGTCAGCGAAAGAAAGGCATCTAGTTGAGATAAAACAAAAACTCGGCATGAACCTGAT
GAATGAATTAAAACAGAACTTCAGCAAAAGCTGGCATGACATGCAGACTACCACTGCCTACAAGAAAACA
CATGAAACCCTGAGTCACGCAGGGCAAAAGGCAACTGCAGCTTTCAGCAACGTTGGAACGGCCATCAGCA
AGAAGTTCGGAGACATGAGACGAAAGTAG

Translation (102 aa):
MLSEEEKEELKAELVQLEDEITTLRQVLSAKERHLVEIKQKLGMNLMNELKQNFSKSWHDMQTTTAYKKT
HETLSHAGQKATAAFSNVGTAISKKFGDMRRK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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