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Report for CCDS7560.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7560.2 Public Homo sapiens 10 XPNPEP1 24 110 108 CCDS HistoryNCBI Gene:7511Re-query CCDS DB by CCDS ID:7560.2Re-query CCDS DB by GeneID:7511See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 7560.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7560.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502935.6 ENSP00000421566.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000502935.6Link to Ensembl Protein Viewer:ENSP00000421566.1Re-query CCDS DB by Nucleotide ID:ENST00000502935Re-query CCDS DB by Protein ID:ENSP00000421566
Original member Current member NCBI NM_020383.4 NP_065116.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020383.4Link to Protein Sequence:NP_065116.3Re-query CCDS DB by Nucleotide ID:NM_020383Re-query CCDS DB by Protein ID:NP_065116Link to BLAST:NP_065116.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065116.3 666 Q9NQW7-3 666 100% 0 0

Chromosomal Locations for CCDS 7560.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 109865184 109865312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109868614 109868712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109869953 109870029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109870731 109870904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109871792 109871861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109873367 109873427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109875528 109875599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109877790 109877867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109878000 109878058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109880188 109880238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109880842 109880931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109882432 109882642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109884067 109884148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109886246 109886341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109888049 109888192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109888503 109888595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109891722 109891826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109893012 109893075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109907691 109907815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109915011 109915099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 109923402 109923433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2001 nt):
ATGGCAGCCTCCAGAAAGCCACCGCGAGTAAGGGTGAATCACCAGGATTTTCAACTGAGAAATTTAAGAA
TAATTGAACCTAACGAGGTGACACACTCAGGAGACACAGGTGTGGAAACAGACGGCAGAATGCCTCCAAA
GGTGACTTCAGAGCTGCTTCGGCAGCTGAGACAAGCCATGAGGAACTCTGAGTATGTGACCGAACCGATC
CAGGCCTACATCATCCCATCGGGAGATGCTCATCAGAGTGAGTATATTGCTCCATGTGACTGTCGGCGGG
CTTTTGTCTCTGGATTCGATGGCTCTGCGGGCACAGCCATCATCACAGAAGAGCATGCAGCCATGTGGAC
TGACGGGCGCTACTTTCTCCAGGCTGCCAAGCAAATGGACAGCAACTGGACACTTATGAAGATGGGTCTG
AAGGACACACCAACTCAGGAAGACTGGCTGGTGAGTGTGCTTCCTGAAGGATCCAGGGTTGGTGTGGACC
CCTTGATCATTCCTACAGATTATTGGAAGAAAATGGCCAAAGTTCTGAGAAGTGCCGGCCATCACCTCAT
TCCTGTCAAGGAGAACCTCGTTGACAAAATCTGGACAGACCGTCCTGAGCGCCCTTGCAAGCCTCTCCTC
ACACTGGGCCTGGATTACACAGGCATCTCCTGGAAGGACAAGGTTGCAGACCTTCGGTTGAAAATGGCTG
AGAGGAACGTCATGTGGTTTGTGGTCACTGCCTTGGATGAGATTGCGTGGCTATTTAATCTCCGAGGATC
AGATGTGGAGCACAATCCAGTATTTTTCTCCTACGCAATCATAGGACTAGAGACGATCATGCTCTTCATT
GATGGTGACCGCATAGACGCCCCCAGTGTGAAGGAGCACCTGCTTCTTGACTTGGGTCTGGAAGCCGAAT
ACAGGATCCAGGTGCATCCCTACAAGTCCATCCTGAGCGAGCTCAAGGCCCTGTGTGCTGACCTCTCCCC
AAGGGAGAAGGTGTGGGTCAGTGACAAGGCCAGCTATGCTGTGAGCGAGACCATCCCCAAGGACCACCGC
TGCTGTATGCCTTACACCCCCATCTGCATCGCCAAAGCTGTGAAGAATTCAGCTGAGTCAGAAGGCATGA
GGCGGGCTCACATTAAAGATGCTGTTGCTCTCTGTGAACTCTTTAACTGGCTGGAGAAAGAGGTTCCCAA
AGGTGGTGTGACAGAGATCTCAGCTGCTGACAAAGCTGAGGAGTTTCGCAGGCAACAGGCAGACTTTGTG
GACCTGAGCTTCCCAACAATTTCCAGTACGGGACCCAACGGCGCCATCATTCACTACGCGCCAGTCCCTG
AGACGAATAGGACCTTGTCCCTGGATGAGGTGTACCTTATTGACTCGGGTGCTCAATACAAGGATGGCAC
CACAGATGTGACGCGGACAATGCATTTTGGGACCCCTACAGCCTACGAGAAGGAATGCTTCACATATGTC
CTCAAGGGCCACATAGCTGTGAGTGCAGCCGTTTTCCCGACTGGAACCAAAGGTCACCTTCTTGACTCCT
TTGCCCGTTCAGCTTTATGGGATTCAGGCCTAGATTACTTGCACGGGACTGGACATGGTGTTGGGTCTTT
TTTGAATGTCCATGAGGGTCCTTGCGGCATCAGTTACAAAACATTCTCTGATGAGCCCTTGGAGGCAGGC
ATGATTGTCACTGATGAGCCCGGGTACTATGAAGATGGGGCTTTTGGAATTCGCATTGAGAATGTTGTCC
TTGTGGTTCCTGTGAAGACCAAGTATAATTTTAATAACCGGGGAAGCCTGACCTTTGAACCTCTAACATT
GGTTCCAATTCAGACCAAAATGATAGATGTGGATTCTCTTACAGACAAAGAGTGCGACTGGCTCAACAAT
TACCACCTGACCTGCAGGGATGTGATTGGGAAGGAATTGCAGAAACAGGGCCGCCAGGAAGCTCTCGAGT
GGCTCATCAGAGAGACGCAACCCATCTCCAAACAGCATTAA

Translation (666 aa):
MAASRKPPRVRVNHQDFQLRNLRIIEPNEVTHSGDTGVETDGRMPPKVTSELLRQLRQAMRNSEYVTEPI
QAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGL
KDTPTQEDWLVSVLPEGSRVGVDPLIIPTDYWKKMAKVLRSAGHHLIPVKENLVDKIWTDRPERPCKPLL
TLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFI
DGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETIPKDHR
CCMPYTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGGVTEISAADKAEEFRRQQADFV
DLSFPTISSTGPNGAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFGTPTAYEKECFTYV
LKGHIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAG
MIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTFEPLTLVPIQTKMIDVDSLTDKECDWLNN
YHLTCRDVIGKELQKQGRQEALEWLIRETQPISKQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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