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Report for CCDS758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
758.1 Public Homo sapiens 1 PALMD 24 110 108 CCDS HistoryNCBI Gene:54873Re-query CCDS DB by CCDS ID:758.1Re-query CCDS DB by GeneID:54873See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 758.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263174.9 ENSP00000263174.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263174.9Link to Ensembl Protein Viewer:ENSP00000263174.4Re-query CCDS DB by Nucleotide ID:ENST00000263174Re-query CCDS DB by Protein ID:ENSP00000263174
Original member Current member NCBI NM_017734.5 NP_060204.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017734.5Link to Protein Sequence:NP_060204.1Re-query CCDS DB by Nucleotide ID:NM_017734Re-query CCDS DB by Protein ID:NP_060204Link to BLAST:NP_060204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060204.1 551 Q9NP74-1 551 100% 0 0

Chromosomal Locations for CCDS 758.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 99646318 99646362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99662319 99662399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99667642 99667766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99686676 99686790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99686930 99686963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99687076 99687189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99688775 99689872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99694019 99694062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGAAGAAGCTGAGCTGGTGAAGGGAAGACTCCAGGCCATCACAGATAAAAGAAAAATACAGGAAGAAA
TCTCACAGAAGCGTCTGAAAATAGAGGAAGACAAACTAAAGCACCAGCATTTGAAGAAAAAGGCCTTGAG
GGAGAAATGGCTTCTAGATGGAATCAGCAGCGGAAAAGAACAGGAAGAGATGAAGAAGCAAAATCAACAA
GACCAGCACCAGATCCAGGTTCTAGAACAAAGTATCCTCAGGCTTGAGAAAGAGATCCAAGATCTTGAAA
AAGCTGAACTGCAAATCTCAACGAAGGAAGAGGCCATTTTAAAGAAACTAAAGTCAATTGAGCGGACAAC
AGAAGACATTATAAGATCTGTGAAAGTGGAAAGAGAAGAAAGAGCAGAAGAGTCAATTGAGGACATCTAT
GCTAATATCCCTGACCTTCCAAAGTCCTACATACCTTCTAGGTTAAGGAAGGAGATAAATGAAGAAAAAG
AAGATGATGAACAAAATAGGAAAGCTTTATATGCCATGGAAATTAAAGTTGAAAAAGACTTGAAGACTGG
AGAAAGTACAGTTCTGTCTTCAATACCTCTGCCATCAGATGACTTTAAAGGTACAGGAATAAAAGTTTAT
GATGATGGGCAAAAGTCAGTGTATGCAGTAAGTTCTAATCACAGTGCAGCATACAATGGCACCGATGGCC
TGGCACCAGTTGAAGTAGAGGAACTTCTAAGACAAGCCTCAGAGAGAAACTCTAAATCCCCAACAGAGTA
TCATGAGCCTGTATATGCCAATCCCTTTTACAGGCCTACAACCCCACAGAGAGAAACGGTGACCCCTGGA
CCAAACTTTCAAGAAAGGATAAAGATTAAAACTAATGGACTGGGTATTGGTGTAAATGAATCCATACACA
ATATGGGCAATGGTCTTTCAGAGGAAAGGGGAAACAACTTCAATCACATCAGTCCCATTCCGCCAGTGCC
TCATCCCCGATCAGTGATTCAACAAGCAGAAGAGAAGCTTCACACCCCGCAAAAAAGGCTAATGACTCCT
TGGGAAGAATCGAATGTCATGCAGGACAAAGATGCACCCTCTCCAAAGCCAAGGCTGAGCCCCAGAGAGA
CAATATTTGGGAAATCTGAACACCAGAATTCTTCACCCACTTGTCAGGAGGACGAGGAAGATGTCAGATA
TAATATCGTTCATTCCCTGCCTCCAGACATAAATGATACAGAACCGGTGACAATGATTTTCATGGGGTAT
CAGCAGGCAGAAGACAGTGAAGAAGATAAGAAGTTTCTGACAGGATATGATGGGATCATCCATGCTGAGC
TGGTTGTGATTGATGATGAGGAGGAGGAGGATGAAGGAGAAGCAGAGAAACCGTCCTACCACCCCATAGC
TCCCCATAGTCAGGTGTACCAGCCAGCCAAACCAACACCACTTCCTAGAAAAAGATCAGAAGCTAGTCCT
CATGAAAACACAAATCATAAATCCCCCCACAAAAATTCCATATCTCTGAAAGAGCAAGAAGAAAGCTTAG
GCAGCCCTGTCCACCATTCCCCATTTGATGCTCAGACAACTGGAGATGGGACTGAGGATCCATCCTTAAC
AGCTTTAAGGATGAGAATGGCAAAGCTGGGAAAAAAGGTGATCTAA

Translation (551 aa):
MEEAELVKGRLQAITDKRKIQEEISQKRLKIEEDKLKHQHLKKKALREKWLLDGISSGKEQEEMKKQNQQ
DQHQIQVLEQSILRLEKEIQDLEKAELQISTKEEAILKKLKSIERTTEDIIRSVKVEREERAEESIEDIY
ANIPDLPKSYIPSRLRKEINEEKEDDEQNRKALYAMEIKVEKDLKTGESTVLSSIPLPSDDFKGTGIKVY
DDGQKSVYAVSSNHSAAYNGTDGLAPVEVEELLRQASERNSKSPTEYHEPVYANPFYRPTTPQRETVTPG
PNFQERIKIKTNGLGIGVNESIHNMGNGLSEERGNNFNHISPIPPVPHPRSVIQQAEEKLHTPQKRLMTP
WEESNVMQDKDAPSPKPRLSPRETIFGKSEHQNSSPTCQEDEEDVRYNIVHSLPPDINDTEPVTMIFMGY
QQAEDSEEDKKFLTGYDGIIHAELVVIDDEEEEDEGEAEKPSYHPIAPHSQVYQPAKPTPLPRKRSEASP
HENTNHKSPHKNSISLKEQEESLGSPVHHSPFDAQTTGDGTEDPSLTALRMRMAKLGKKVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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