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Report for CCDS76178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76178.1 Public Homo sapiens 1 SELENOF 24 110 108 CCDS HistoryNCBI Gene:9403Re-query CCDS DB by CCDS ID:76178.1Re-query CCDS DB by GeneID:9403See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 76178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331835.10 ENSP00000328729.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331835.10Link to Ensembl Protein Viewer:ENSP00000328729.6Re-query CCDS DB by Nucleotide ID:ENST00000331835Re-query CCDS DB by Protein ID:ENSP00000328729
Original member Current member NCBI NM_004261.5 NP_004252.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004261.5Link to Protein Sequence:NP_004252.2Re-query CCDS DB by Nucleotide ID:NM_004261Re-query CCDS DB by Protein ID:NP_004252Link to BLAST:NP_004252.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004252.2 165 O60613-1 165 100% 0 0

Chromosomal Locations for CCDS 76178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86863474 86863605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86868053 86868102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86880662 86880725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86903281 86903448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86914028 86914111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 96

Nucleotide Sequence (498 nt):
ATGGTAGCGATGGCGGCTGGGCCGAGTGGGTGTCTGGTGCCGGCGTTTGGGCTACGGTTGTTGTTGGCGA
CTGTGCTTCAAGCGGTGTCTGCTTTTGGGGCAGAGTTTTCATCGGAGGCATGCAGAGAGTTAGGCTTTTC
TAGCAACTTGCTTTGCAGCTCTTGTGATCTTCTCGGACAGTTCAACCTGCTTCAGCTGGATCCTGATTGC
AGAGGATGCTGTCAGGAGGAAGCACAATTTGAAACCAAAAAGCTGTATGCAGGAGCTATTCTTGAAGTTT
GTGGATGAAAATTGGGAAGGTTCCCTCAAGTCCAAGCTTTTGTTAGGAGTGATAAACCCAAACTGTTCAG
AGGACTGCAAATCAAGTATGTCCGTGGTTCAGACCCTGTATTAAAGCTTTTGGACGACAATGGGAACATT
GCTGAAGAACTGAGCATTCTCAAATGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAAC
GCATATAA

Translation (165 aa):
MVAMAAGPSGCLVPAFGLRLLLATVLQAVSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDC
RGCCQEEAQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNI
AEELSILKWNTDSVEEFLSEKLERI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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