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Report for CCDS76180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76180.1 Public Homo sapiens 1 CCDC18 24 110 108 CCDS HistoryNCBI Gene:343099Re-query CCDS DB by CCDS ID:76180.1Re-query CCDS DB by GeneID:343099See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 76180.1
This gene lacks full-length transcript support, and therefore the exon combination of this CCDS representation is inferred based on partial transcript alignments, orthologous alignments and RNA-seq data.

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 76180.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343253.11 ENSP00000343377.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343253.11Link to Ensembl Protein Viewer:ENSP00000343377.7Re-query CCDS DB by Nucleotide ID:ENST00000343253Re-query CCDS DB by Protein ID:ENSP00000343377
Original member Current member EBI ENST00000370276.6 ENSP00000359299.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370276.6Link to Ensembl Protein Viewer:ENSP00000359299.2Re-query CCDS DB by Nucleotide ID:ENST00000370276Re-query CCDS DB by Protein ID:ENSP00000359299
Original member Current member NCBI NM_001306076.1 NP_001293005.1 Accepted alive Link to Nucleotide Sequence:NM_001306076.1Link to Protein Sequence:NP_001293005.1Re-query CCDS DB by Nucleotide ID:NM_001306076Re-query CCDS DB by Protein ID:NP_001293005Link to BLAST:NP_001293005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001293005.1 1454 Q5T9S5-1 1454 100% 0 0

Chromosomal Locations for CCDS 76180.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 93183362 93183495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93183978 93184146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93186345 93186503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93192000 93192106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93193616 93193744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93201892 93201988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93205510 93205631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93207107 93207398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93210802 93210926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93212101 93212261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93214746 93214966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93216636 93216746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93217738 93217869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221609 93221743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93221859 93221936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93226333 93226449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93232426 93232593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93236248 93236390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239310 93239473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93239683 93239896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246105 93246204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93246838 93246954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93254471 93254614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93256335 93256538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93258748 93258885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93264701 93264901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93270347 93270814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 93278463 93278477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4365 nt):
ATGGAATCTAGTTCATCAGACTACTATAATAAAGACAATGAAGAGGAAAGTTTGCTTGCAAATGTTGCTT
CCTTAAGACATGAACTGAAGATAACAGAATGGAGTTTGCAGAGTTTAGGGGAAGAGTTATCCAGTGTTAG
TCCAAGTGAAAATTCTGATTATGCCCCTAATCCTTCAAGGTCTGAAAAGCTAATTTTGGATGTTCAGCCT
AGCCACCCTGGACTTTTGAATTATTCACCTTATGAAAACGTCTGTAAAATATCTGGTAGCAGCACTGATT
TTCAAAAAAAGCCAAGAGATAAGATGTTTTCATCTTCTGCCCCTGTGGATCAGGAGATTAAAAGCCTTCG
AGAGAAACTAAATAAACTTAGGCAACAGAATGCTTGTTTGGTCACACAGAATCATTCCTTAATGACTAAA
TTTGAATCTATTCACTTTGAATTAACACAGTCAAGAGCAAAAGTTTCTATGCTTGAGTCTGCTCAACAGC
AGGCAGCCAGTGTCCCAATCTTAGAAGAACAGATTATAAATTTGGAAGCAGAGGTTTCAGCTCAAGATAA
AGTTTTGAGAGAGGCAGAAAATAAGCTGGAACAGAGCCAGAAAATGGTAATTGAAAAGGAACAGAGTTTG
CAGGAGTCCAAAGAGGAATGTATAAAATTAAAGGTGGACTTACTTGAACAAACCAAACAAGGAAAAAGAG
CTGAACGACAAAGGAATGAAGCACTATATAATGCCGAAGAGCTGAGTAAAGCTTTCCAACAATATAAAAA
AAAAGTGGCTGAAAAACTGGAAAAGGTTCAAGCTGAAGAAGAAATATTAGAGAGAAATCTAACTAACTGT
GAAAAAGAAAATAAAAGGCTACAAGAAAGGTGTGGTCTATATAAAAGTGAACTTGAAATTCTGAAAGAGA
AATTAAGGCAGTTAAAAGAAGAAAATAACAACGGAAAAGAAAAATTAAGGATCATGGCAGTGAAAAATTC
AGAAGTCATGGCACAACTAACTGAATCTAGACAAAGTATTTTGAAGCTAGAGAGTGAGTTAGAGAACAAA
GACGAAATACTTAGAGACAAATTTTCTTTAATGAATGAAAACCGAGAATTAAAGGTCCGTGTTGCAGCAC
AGAATGAGCGACTAGATTTATGTCAACAAGAAATTGAAAGTTCAAGGGTAGAACTAAGAAGTTTGGAAAA
GATTATATCCCAGTTGCCATTAAAAAGAGAATTATTTGGCTTTAAATCATATCTTTCTAAATACCAGATG
AGTAGCTTCTCAAACAAGGAAGACCGTTGCATTGGCTGCTGTGAGGCAAATAAATTGGTGATTTCGGAAT
TGAGAATTAAGCTTGCAATAAAAGAGGCAGAAATTCAAAAGCTTCATGCAAACCTGACTGCAAATCAGTT
ATCTCAGAGTCTTATTACTTGTAATGACAGCCAAGAAAGTAGCAAATTAAGTAGTTTAGAAACAGAACCT
GTAAAGCTAGGTGGTCATCAAGTAGAAAGCGTAAAAGATCAAAATCAACATACTATGAACAAGCAATATG
AAAAAGAGAGGCAAAGACTTGTTACTGGAATAGAAGAACTACGTACTAAGCTGATACAAATAGAAGCTGA
AAATTCTGATTTGAAGGTTAACATGGCTCACAGAACTAGTCAGTTTCAGCTGATTCAAGAGGAGCTGCTA
GAGAAAGCTTCAAACTCCAGCAAACTGGAAAGTGAAATGACAAAGAAATGTTCTCAACTTTTAACTCTTG
AGAAACAGCTGGAAGAAAAGATAGTTGCTTATTCCTCTATTGCTGCAAAAAATGCAGAACTAGAACAGGA
GCTTATGGAAAAGAATGAAAAGATAAGGAGTCTAGAAACCAATATTAATACAGAGCATGAGAAAATTTGT
TTAGCCTTTGAAAAAGCAAAGAAAATTCACTTGGAACAGCATAAAGAAATGGAAAAGCAGATTGAAAGAC
TTGAAGCTCAACTAGAGAAAAAGGACCAACAATTTAAAGAACAAGAAAAGACTATGTCCATGTTGCAACA
AGATATAATATGCAAACAACATCATCTTGAATCACTAGATAGACTCTTGACGGAAAGCAAAGGGGAAATG
AAAAAGGAAAATATGAAGAAAGATGAAGCTTTAAAAGCATTACAGAACCAAGTATCTGAAGAAACAATCA
AGGTTAGGCAACTAGATTCAGCATTGGAAATTTGTAAGGAAGAACTTGTCTTGCATTTGAATCAATTGGA
AGGAAATAAGGAAAAGTTTGAAAAACAGTTAAAGAAGAAATCTGAAGAGGTATATTGTTTACAGAAAGAG
CTAAAGATAAAAAATCACAGTCTTCAAGAGACTTCTGAGCAAAACGTTATTCTACAGCATACTCTTCAGC
AACAGCAGCAAATGTTACAACAAGAGACAATTAGAAATGGAGAGCTAGAAGATACTCAAACTAAACTTGA
AAAACAGGTGTCAAAACTGGAACAAGAACTTCAAAAACAAAGGGAAAGTTCAGCTGAAAAGTTGAGAAAA
ATGGAGGAGAAATGTGAATCAGCTGCACATGAAGCAGATTTGAAAAGGCAAAAAGTGATTGAGCTTACTG
GCACTGCCAGGCAAGTAAAGATTGAGATGGATCAGTACAAAGAAGAGCTGTCTAAAATGGAAAAGGAAAT
AATGCACCTAAAACGAGATGGAGAAAATAAAGCAATGCACCTCTCTCAATTAGATATGATCTTAGATCAG
ACAAAGACAGAGCTAGAAAAGAAAACAAATGCTGTAAAGGAGTTAGAAAAGTTACAGCACAGTACTGAAA
CTGAACTAACAGAAGCCTTGCAAAAACGGGAAGTACTTGAGACTGAACTACAAAATGCTCATGGAGAATT
AAAAAGTACTTTAAGACAACTCCAGGAATTGAGAGATGTACTACAGAAGGCTCAATTATCATTAGAGGAA
AAATACACTACTATAAAGGATCTCACAGCTGAACTTAGAGAATGCAAGATGGAGATTGAAGACAAAAAGC
AGGAGCTCCTTGAAATGGATCAGGCACTTAAAGAGAGAAATTGGGAACTAAAGCAAAGAGCAGCTCAGGT
TACACATTTGGATATGACTATTCGTGAGCACAGAGGAGAAATGGAACAAAAAATAATTAAATTAGAAGGT
ACTCTGGAGAAATCAGAATTGGAACTTAAAGAATGTAACAAACAGATAGAAAGTCTGAATGACAAATTAC
AAAATGCTAAAGAACAGCTTCGAGAAAAAGAGTTTATAATGCTACAAAATGAACAGGAGATAAGTCAACT
GAAAAAAGAAATTGAAAGAACACAACAAAGGATGAAAGAAATGGAGAGTGTTATGAAAGAGCAAGAACAG
TACATTGCCACTCAGTACAAGGAGGCCATAGATTTGGGGCAAGAATTGAGGCTGACCCGGGAGCAGGTGC
AGAACTCTCATACAGAATTGGCAGAGGCTCGTCATCAGCAAGTCCAAGCACAGAGAGAAATAGAAAGGCT
CTCTAGTGAACTGGAGGATATGAAGCAACTCTCTAAAGAGAAAGATGCTCATGGAAACCATTTAGCTGAA
GAACTGGGGGCTTCTAAAGTACGTGAAGCTCATTTAGAAGCAAGAATGCAAGCAGAAATCAAGAAATTGT
CAGCAGAAGTAGAATCTCTCAAAGAAGCTTATCATATGGAGATGATTTCACATCAAGAGAACCATGCAAA
GTGGAAGATTTCTGCTGACTCTCAAAAGTCTTCTGTTCAGCAACTAAACGAACAGTTAGAGAAGGCAAAA
TTGGAATTAGAAGAAGCTCAGGATACTGTAAGCAATTTGCATCAACAAGTCCAAGATAGGAATGAAGTAA
TTGAAGCTGCAAATGAAGCATTACTTACTAAAGAATCAGAATTAACCAGATTACAGGCCAAAATTTCTGG
ACATGAAAAGGCAGAAGACATCAAGTTTCTGCCAGCCCCATTTACATCTCCAACAGAAATTATGCCTGAT
GTTCAAGATCCAAAATTTGCTAAATGTTTTCACACATCTTTTTCCAAGTGTACAAAATTACGTCGCTCTA
TTAGTGCCAGTGATCTTACTTTCAAAATTCATGGTGATGAAGATCTTTCTGAAGAATTACTACAGGACTT
AAAGAAAATGCAATTAGAACAGCCTTCAACATTAGAAGAAAGCCATAAGAATCTGACTTACACCCAGCCA
GACTCATTTAAACCTCTCACATATAACCTAGAAGCTGATAGTTCTGAGAATAATGACTTTAACACGCTTA
GTGGGATGCTAAGATACATAAACAAAGAAGTAAGACTATTAAAAAAGTCTTCTATGCAAACAGGTGCTGG
TTTAAATCAGGGAGAAAATGTGTAA

Translation (1454 aa):
MESSSSDYYNKDNEEESLLANVASLRHELKITEWSLQSLGEELSSVSPSENSDYAPNPSRSEKLILDVQP
SHPGLLNYSPYENVCKISGSSTDFQKKPRDKMFSSSAPVDQEIKSLREKLNKLRQQNACLVTQNHSLMTK
FESIHFELTQSRAKVSMLESAQQQAASVPILEEQIINLEAEVSAQDKVLREAENKLEQSQKMVIEKEQSL
QESKEECIKLKVDLLEQTKQGKRAERQRNEALYNAEELSKAFQQYKKKVAEKLEKVQAEEEILERNLTNC
EKENKRLQERCGLYKSELEILKEKLRQLKEENNNGKEKLRIMAVKNSEVMAQLTESRQSILKLESELENK
DEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPLKRELFGFKSYLSKYQM
SSFSNKEDRCIGCCEANKLVISELRIKLAIKEAEIQKLHANLTANQLSQSLITCNDSQESSKLSSLETEP
VKLGGHQVESVKDQNQHTMNKQYEKERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELL
EKASNSSKLESEMTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMEKNEKIRSLETNINTEHEKIC
LAFEKAKKIHLEQHKEMEKQIERLEAQLEKKDQQFKEQEKTMSMLQQDIICKQHHLESLDRLLTESKGEM
KKENMKKDEALKALQNQVSEETIKVRQLDSALEICKEELVLHLNQLEGNKEKFEKQLKKKSEEVYCLQKE
LKIKNHSLQETSEQNVILQHTLQQQQQMLQQETIRNGELEDTQTKLEKQVSKLEQELQKQRESSAEKLRK
MEEKCESAAHEADLKRQKVIELTGTARQVKIEMDQYKEELSKMEKEIMHLKRDGENKAMHLSQLDMILDQ
TKTELEKKTNAVKELEKLQHSTETELTEALQKREVLETELQNAHGELKSTLRQLQELRDVLQKAQLSLEE
KYTTIKDLTAELRECKMEIEDKKQELLEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEG
TLEKSELELKECNKQIESLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQ
YIATQYKEAIDLGQELRLTREQVQNSHTELAEARHQQVQAQREIERLSSELEDMKQLSKEKDAHGNHLAE
ELGASKVREAHLEARMQAEIKKLSAEVESLKEAYHMEMISHQENHAKWKISADSQKSSVQQLNEQLEKAK
LELEEAQDTVSNLHQQVQDRNEVIEAANEALLTKESELTRLQAKISGHEKAEDIKFLPAPFTSPTEIMPD
VQDPKFAKCFHTSFSKCTKLRRSISASDLTFKIHGDEDLSEELLQDLKKMQLEQPSTLEESHKNLTYTQP
DSFKPLTYNLEADSSENNDFNTLSGMLRYINKEVRLLKKSSMQTGAGLNQGENV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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