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Report for CCDS76275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76275.1 Public Homo sapiens 1 COA6 24 110 108 CCDS HistoryNCBI Gene:388753Re-query CCDS DB by CCDS ID:76275.1Re-query CCDS DB by GeneID:388753See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366615.10 ENSP00000355574.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366615.10Link to Ensembl Protein Viewer:ENSP00000355574.5Re-query CCDS DB by Nucleotide ID:ENST00000366615Re-query CCDS DB by Protein ID:ENSP00000355574
Original member Current member NCBI NM_001206641.3 NP_001193570.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001206641.3Link to Protein Sequence:NP_001193570.2Re-query CCDS DB by Nucleotide ID:NM_001206641Re-query CCDS DB by Protein ID:NP_001193570Link to BLAST:NP_001193570.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193570.2 155 Q5JTJ3-2 155 100% 0 0

Chromosomal Locations for CCDS 76275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 234373467 234373678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234374230 234374389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 234383723 234383818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (468 nt):
ATGGTAGCTCGGAAGGGTCAAAAGAGTCCGCGGTTTCGCCGCGTGAGTTGCTTTTTGCGGCTGGGGAGGT
CTACGCTTCTAGAGCTTGAGCCAGCGGGGCGACCCTGCAGTGGCAGGACTCGGCACCGCGCCCTCCACCG
CCGGTTGGTGGCCTGCGTGACAGTTTCCTCCCGTCGACATCGAAAGGAAGCCGGACGTGGGCGGGCAGAG
AGCTTCATCGCAGTAGGAATGGCAGCCCCATCTATGAAGGAAAGACAGGTCTGCTGGGGGGCCCGGGATG
AGTACTGGAAGTGTTTAGATGAGAACTTAGAGGATGCTTCTCAATGCAAGAAGTTAAGAAGCTCTTTCGA
ATCAAGTTGTCCCCAACAGTGGATAAAATATTTTGATAAAAGAAGAGACTACTTAAAATTCAAAGAAAAA
TTTGAAGCAGGACAATTTGAGCCTTCAGAAACAACTGCAAAATCCTAG

Translation (155 aa):
MVARKGQKSPRFRRVSCFLRLGRSTLLELEPAGRPCSGRTRHRALHRRLVACVTVSSRRHRKEAGRGRAE
SFIAVGMAAPSMKERQVCWGARDEYWKCLDENLEDASQCKKLRSSFESSCPQQWIKYFDKRRDYLKFKEK
FEAGQFEPSETTAKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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