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Report for CCDS76425.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76425.1 Public Homo sapiens 11 SLC22A11 24 110 108 CCDS HistoryNCBI Gene:55867Re-query CCDS DB by CCDS ID:76425.1Re-query CCDS DB by GeneID:55867See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76425.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377585.7 ENSP00000366809.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377585.7Link to Ensembl Protein Viewer:ENSP00000366809.3Re-query CCDS DB by Nucleotide ID:ENST00000377585Re-query CCDS DB by Protein ID:ENSP00000366809
Original member Current member NCBI NM_001307985.2 NP_001294914.1 Accepted alive Link to Nucleotide Sequence:NM_001307985.2Link to Protein Sequence:NP_001294914.1Re-query CCDS DB by Nucleotide ID:NM_001307985Re-query CCDS DB by Protein ID:NP_001294914Link to BLAST:NP_001294914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001294914.1 442 Q9NSA0-2 442 100% 0 0

Chromosomal Locations for CCDS 76425.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 64556000 64556392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64559135 64559238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64562004 64562158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64562267 64562435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64564308 64564428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64565222 64565337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64569652 64569858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 64570979 64571042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGCGTTCTCGAAGCTCTTGGAGCAAGCCGGAGGCGTGGGCCTCTTCCAGACCCTGCAGGTGCTCACCT
TCATCCTCCCCTGCCTCATGATACCTTCCCAGATGCTCCTGGAGAACTTCTCAGCCGCCATCCCAGGCCA
CCGATGCTGGACACACATGCTGGACAATGGCTCTGCGGTTTCCACAAACATGACCCCCAAGGCCCTTCTG
ACCATCTCCATCCCGCCAGGCCCCAACCAGGGGCCCCACCAGTGCCGCCGCTTCCGCCAGCCACAGTGGC
AGCTCTTGGACCCCAATGCCACGGCCACCAGCTGGAGCGAAGCTGACACGGAGCCGTGTGTGGACGGCTG
GGTCTATGACCGCAGCGTCTTCACCTCCACCATCGTGGCCAAGTGGGACCTGGTGTGCAGCTCCCAGGGC
TTGAAGCCCCTAAGCCAGTCCATCTTCATGTCCGGGATCCTGGTGGGCTCCTTTATCTGGGGCCTCCTCT
CCTACCGGTTTGGGAGGAAGCCGATGCTGAGCTGGTGCTGCCTGCAGTTGGCCGTGGCGGGCACCAGCAC
CATCTTCGCCCCAACATTCGTCATCTACTGCGGCCTGCGGTTCGTGGCCGCTTTTGGGATGGCCGGCATC
TTTCTGAGTTCACTGACACTGATGGTGGAGTGGACCACGACCAGCAGGAGGGCGGTCACCATGACGGTGG
TGGGATGTGCCTTCAGCGCAGGCCAGGCGGCGCTGGGCGGCCTGGCCTTTGCCCTGCGGGACTGGAGGAC
TCTCCAGCTGGCAGCATCAGTGCCCTTCTTTGCCATCTCCCTGATATCCTGGTGGCTGCCAGAATCCGCC
CGGTGGCTGATTATTAAGGGCAAACCAGACCAAGCACTTCAGGAGCTCAGAAAGGTGGCCAGGATAAATG
GCCACAAGGAGGCCAAGAACCTGACCATAGAGGTGCTGATGTCCAGCGTGAAGGAGGAGGTGGCCTCTGC
AAAGGAGCCGCGGTCGGTGCTGGACCTGTTCTGCGTGCCCGTGCTCCGCTGGAGGAGCTGCGCCATGCTG
GTGGTGAAGATGACAGCAGATGGCATTCTGCATACAGTGGGCCGGCTGGGGGCTATGATGGGTCCCCTGA
TCCTGATGAGCCGCCAAGCCCTGCCCCTGCTGCCTCCTCTCCTCTATGGCGTTATCTCCATTGCTTCCAG
CCTGGTTGTGCTGTTCTTCCTCCCGGAGACCCAGGGACTTCCGCTCCCTGACACTATCCAGGACCTGGAG
AGCCAGAAATCAACAGCAGCCCAGGGCAACCGGCAAGAGGCCGTCACTGTGGAAAGTACCTCGCTCTAG

Translation (442 aa):
MAFSKLLEQAGGVGLFQTLQVLTFILPCLMIPSQMLLENFSAAIPGHRCWTHMLDNGSAVSTNMTPKALL
TISIPPGPNQGPHQCRRFRQPQWQLLDPNATATSWSEADTEPCVDGWVYDRSVFTSTIVAKWDLVCSSQG
LKPLSQSIFMSGILVGSFIWGLLSYRFGRKPMLSWCCLQLAVAGTSTIFAPTFVIYCGLRFVAAFGMAGI
FLSSLTLMVEWTTTSRRAVTMTVVGCAFSAGQAALGGLAFALRDWRTLQLAASVPFFAISLISWWLPESA
RWLIIKGKPDQALQELRKVARINGHKEAKNLTIEVLMSSVKEEVASAKEPRSVLDLFCVPVLRWRSCAML
VVKMTADGILHTVGRLGAMMGPLILMSRQALPLLPPLLYGVISIASSLVVLFFLPETQGLPLPDTIQDLE
SQKSTAAQGNRQEAVTVESTSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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