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Report for CCDS76851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76851.1 Public Homo sapiens 16 SH2B1 24 110 108 CCDS HistoryNCBI Gene:25970Re-query CCDS DB by CCDS ID:76851.1Re-query CCDS DB by GeneID:25970See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76851.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538342.5 ENSP00000438784.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538342.5Link to Ensembl Protein Viewer:ENSP00000438784.1Re-query CCDS DB by Nucleotide ID:ENST00000538342Re-query CCDS DB by Protein ID:ENSP00000438784
Original member Current member NCBI NM_001308294.2 NP_001295223.1 Accepted alive Link to Nucleotide Sequence:NM_001308294.2Link to Protein Sequence:NP_001295223.1Re-query CCDS DB by Nucleotide ID:NM_001308294Re-query CCDS DB by Protein ID:NP_001295223Link to BLAST:NP_001295223.1

Chromosomal Locations for CCDS 76851.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28867400 28867432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28869006 28869097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28869208 28869383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28871780 28871983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28872190 28872401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28872534 28872705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28873170 28873269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28873447 28873465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGCCTGACCGGGAGAACACGTTTGTGGTTAAGGTGGAAGGTCCATCCGAGTATATCATGGAGACAGTGG
ATGCCCAGCATGTGAAGGCCTGGGTGTCTGACATCCAAGAATGCCTGAGCCCAGGACCCTGCCCTGCTAC
CAGTCCCCGCCCCATGACCCTCCCTCTGGCCCCTGGGACCTCATTCCTTACAAGGGAGAACACAGACAGC
CTGGAGCTGTCCTGCCTGAATCACTCGGAGAGTCTACCCAGCCAGGACCTGCTGCTTGGACCCAGCGAGA
GCAATGACCGCCTGTCGCAGGGGGCATATGGGGGCCTCTCAGACCGCCCCTCGGCATCCATCTCCCCCAG
CTCTGCCTCCATTGCCGCCTCCCATTTTGACTCGATGGAACTGCTTCCCCCAGAGTTGCCCCCCCGCATC
CCCATTGAAGAGGGACCCCCAACAGGGACAGTTCATCCCCTCTCAGCCCCCTACCCTCCCTTGGACACTC
CGGAAACAGCCACAGGGTCCTTCCTGTTCCAGGGGGAGCCAGAGGGCGGTGAGGGGGACCAGCCCCTCTC
AGGGTATCCTTGGTTCCACGGGATGCTCTCTCGGCTCAAGGCTGCACAGTTGGTGCTGACTGGCGGCACT
GGCTCCCACGGTGTCTTCCTGGTGCGCCAGAGTGAGACAAGGCGGGGTGAATACGTCCTCACCTTCAACT
TCCAGGGCAAGGCCAAGCACCTGCGTTTGTCGCTGAACGAGGAGGGTCAGTGCCGGGTCCAGCACCTGTG
GTTCCAGTCCATTTTCGATATGCTCGAGCACTTCCGGGTGCACCCCATCCCTTTGGAGTCGGGAGGCTCC
AGTGATGTTGTCCTTGTCAGCTATGTCCCATCCTCCCAGCGACAGCAGGGCCGGGAGCAGGCTGGGAGCC
ATGCGGGGGTGTGCGAGGGAGATGGATGCCACCCCGATGCCTCCTGCACCCTCATGCCCTTCGGAGCGAG
TGACTGTGTAACCGACCACCTCCCATGA

Translation (335 aa):
MPDRENTFVVKVEGPSEYIMETVDAQHVKAWVSDIQECLSPGPCPATSPRPMTLPLAPGTSFLTRENTDS
LELSCLNHSESLPSQDLLLGPSESNDRLSQGAYGGLSDRPSASISPSSASIAASHFDSMELLPPELPPRI
PIEEGPPTGTVHPLSAPYPPLDTPETATGSFLFQGEPEGGEGDQPLSGYPWFHGMLSRLKAAQLVLTGGT
GSHGVFLVRQSETRRGEYVLTFNFQGKAKHLRLSLNEEGQCRVQHLWFQSIFDMLEHFRVHPIPLESGGS
SDVVLVSYVPSSQRQQGREQAGSHAGVCEGDGCHPDASCTLMPFGASDCVTDHLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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