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Report for CCDS76985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76985.1 Public Homo sapiens 17 RAB11FIP4 24 110 108 CCDS HistoryNCBI Gene:84440Re-query CCDS DB by CCDS ID:76985.1Re-query CCDS DB by GeneID:84440See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76985.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394744.6 ENSP00000378227.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394744.6Link to Ensembl Protein Viewer:ENSP00000378227.2Re-query CCDS DB by Nucleotide ID:ENST00000394744Re-query CCDS DB by Protein ID:ENSP00000378227
Original member Current member NCBI NM_001303542.3 NP_001290471.2 Accepted alive Link to Nucleotide Sequence:NM_001303542.3Link to Protein Sequence:NP_001290471.2Re-query CCDS DB by Nucleotide ID:NM_001303542Re-query CCDS DB by Protein ID:NP_001290471Link to BLAST:NP_001290471.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290471.2 535 Q86YS3-2 535 100% 0 0

Chromosomal Locations for CCDS 76985.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 31488243 31488272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31517651 31517877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31521166 31521360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31521915 31522049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31522360 31522395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31523512 31523611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31523893 31523996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31525090 31525230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31527842 31527923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31528406 31528543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31528620 31528778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31530326 31530469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 31531616 31531732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGCGCACCCCGCCAGCTCTCGGGAGCCAGGGCAGCGAGGTCACAGGCCCCACCTTTGCTGATGGCGAGC
TCATCCCCAGGGAACCCGGCTTTTTTCCCGAGGACGAGGAGGAGGCTATGACGCTGGCGCCACCTGAGGG
CCCCCAGGAGTTGTACACAGACAGCCCCATGGAGAGCACTCAGAGCCTGGAGGGGTCTGTCGGGAGTCCT
GCCGAGAAGGACGGGGGACTTGGGGGCCTGTTTCTGCCAGAAGACAAGTCCCTGGTCCACACTCCATCCA
TGACGACCTCAGACCTTTCTACACACTCCACCACCTCGCTCATCAGCAATGAGGAGCAGTTTGAAGACTA
TGGGGAGGGTGACGATGTGGACTGTGCCCCCAGCAGCCCTTGCCCCGATGATGAGACCAGGACCAACGTC
TACTCGGACCTGGGGTCTTCGGTGTCTTCCAGTGCGGGGCAGACGCCTAGGAAAATGCGGCACGTGTACA
ACAGCGAATTGCTAGATGTTTACTGCTCTCAATGCTGCAAGAAAATCAACCTGCTCAATGACTTGGAAGC
CCGACTGAAAAACCTGAAGGCCAACAGCCCCAACCGAAAGATCTCCAGCACGGCCTTTGGACGGCAGCTC
ATGCACAGCAGCAACTTCAGCAGCAGCAATGGCAGCACCGAAGACCTGTTCCGGGACAGCATTGACTCTT
GCGACAATGACATCACAGAGAAGGTAAGCTTCCTGGAAAAGAAGGTGACAGAGCTGGAGAATGACAGCCT
GACCAATGGGGACCTGAAGAGCAAGCTGAAGCAAGAGAACACACAGCTGGTGCACAGGGTGCATGAGCTG
GAGGAGATGGTGAAGGATCAGGAGACCACGGCCGAGCAGGCTCTGGAGGAGGAGGCGCGGCGCCACCGCG
AGGCCTACGGCAAGCTGGAGAGGGAGAAGGCTACCGAGGTGGAGCTGCTCAATGCCAGGGTGCAGCAGTT
GGAGGAAGAAAATACAGAGCTTAGAACAACAGTGACTCGGCTCAAGTCTCAAACAGAGAAACTGGATGAG
GAGCGGCAGCGCATGTCTGACCGTCTGGAGGACACCAGCCTGCGGCTCAAAGATGAGATGGACCTGTACA
AGCGCATGATGGACAAGCTGCGACAGAACCGCCTTGAGTTCCAGAAGGAGCGGGAGGCGACGCAGGAGCT
CATCGAGGACTTGCGGAAGGAGCTGGAGCACCTGCAGATGTACAAGCTGGACTGCGAGCGGCCAGGCAGG
GGCCGCAGTGCCTCCTCTGGCCTAGGCGAGTTCAATGCCAGGGCCCGCGAGGTGGAGCTCGAGCACGAGG
TCAAGCGGCTCAAGCAGGAGAATTATAAGCTGCGGGATCAGAACGACGACTTGAATGGGCAGATTTTGAG
CCTCAGCCTCTACGAAGCAAAAAACCTCTTTGCTGCCCAGACTAAAGCCCAGTCTCTGGCTGCGGAGATA
GACACCGCCTCGCGCGATGAGCTAATGGAAGCCCTGAAGGAGCAGGAGGAGATCAACTTCCGGCTGAGGC
AGTACATGGACAAGATTATCCTCGCCATCCTGGACCACAATCCCTCCATCCTCGAGATCAAACACTAA

Translation (535 aa):
MRTPPALGSQGSEVTGPTFADGELIPREPGFFPEDEEEAMTLAPPEGPQELYTDSPMESTQSLEGSVGSP
AEKDGGLGGLFLPEDKSLVHTPSMTTSDLSTHSTTSLISNEEQFEDYGEGDDVDCAPSSPCPDDETRTNV
YSDLGSSVSSSAGQTPRKMRHVYNSELLDVYCSQCCKKINLLNDLEARLKNLKANSPNRKISSTAFGRQL
MHSSNFSSSNGSTEDLFRDSIDSCDNDITEKVSFLEKKVTELENDSLTNGDLKSKLKQENTQLVHRVHEL
EEMVKDQETTAEQALEEEARRHREAYGKLEREKATEVELLNARVQQLEEENTELRTTVTRLKSQTEKLDE
ERQRMSDRLEDTSLRLKDEMDLYKRMMDKLRQNRLEFQKEREATQELIEDLRKELEHLQMYKLDCERPGR
GRSASSGLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNLFAAQTKAQSLAAEI
DTASRDELMEALKEQEEINFRLRQYMDKIILAILDHNPSILEIKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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