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Report for CCDS77023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77023.1 Public Homo sapiens 17 RAPGEFL1 24 110 108 CCDS HistoryNCBI Gene:51195Re-query CCDS DB by CCDS ID:77023.1Re-query CCDS DB by GeneID:51195See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544503.5 ENSP00000438631.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544503.5Link to Ensembl Protein Viewer:ENSP00000438631.1Re-query CCDS DB by Nucleotide ID:ENST00000544503Re-query CCDS DB by Protein ID:ENSP00000438631
Original member Current member NCBI NM_001303534.3 NP_001290463.1 Accepted alive Link to Nucleotide Sequence:NM_001303534.3Link to Protein Sequence:NP_001290463.1Re-query CCDS DB by Nucleotide ID:NM_001303534Re-query CCDS DB by Protein ID:NP_001290463Link to BLAST:NP_001290463.1

Chromosomal Locations for CCDS 77023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40177236 40177284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40181616 40181694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40184214 40184349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40184581 40184678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40188866 40188978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40189208 40189375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40190434 40190531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40190640 40190762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40191316 40191494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40191582 40191672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192213 40192263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192606 40192693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192926 40192990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40193363 40193417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40193664 40193788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGATGCTGAGACCCGGTTATCCCTTGAGCCAGGAATCCTTCCCCATTGATATCCTGCTGGATGACATTG
TCCTTACCCATTCTCTCTTCCTCCCGACGGAGAAATTTCTGCAGGAGCTACACCAGTACTTTGTTCGGGC
AGGAGGCATGGAGGGCCCTGAAGGGCTGGGCCGGAAGCAAGCCTGTCTAGCCATGCTTCTCCATTTCTTG
GACACCTACCAGGGGCTGCTTCAAGAGGAAGAGGGGGCCGGCCACATCATCAAGGATCTATACCTGCTAA
TTATGAAGGACGAGTCCCTTTACCAGGGCCTCCGAGAGGACACTCTGAGGCTGCACCAGCTGGTGGAGAC
GGTGGAACTAAAGATTCCAGAGGAGAACCAGCCACCCAGCAAGCAGGTGAAGCCACTCTTCCGCCACTTC
CGCCGGATAGACTCCTGTCTGCAGACCCGGGTGGCCTTCCGGGGCTCTGATGAGATCTTCTGCCGTGTAT
ACATGCCTGACCACTCTTATGTGACCATACGCAGCCGCCTTTCAGCATCTGTGCAGGACATTCTGGGCTC
TGTGACGGAGAAACTTCAATATTCAGAGGAGCCCGCGGGGCGTGAGGATTCCCTCATCCTGGTAGCTGTG
TCCTCCTCTGGAGAGAAGGTCCTTCTCCAGCCCACTGAGGACTGTGTTTTCACCGCACTGGGCATCAACA
GCCACCTGTTTGCCTGTACTCGGGACAGCTATGAGGCTCTGGTGCCCCTCCCCGAGGAGATCCAGGTCTC
CCCTGGAGACACAGAGATCCACCGAGTGGAGCCTGAGGACGTTGCCAACCACCTAACTGCCTTCCACTGG
GAGCTGTTCCGATGTGTGCATGAGCTGGAGTTCGTGGACTACGTGTTCCACGGGGAGCGCGGCCGCCGGG
AGACGGCCAACTTGGAGCTGCTGCTGCAGCGCTGCAGCGAGGTCACGCACTGGGTGGCCACCGAAGTGCT
GCTCTGCGAGGCCCCGGGCAAGCGCGCGCAGCTGCTCAAGAAGTTCATCAAGATCGCGGCCCTCTGCAAG
CAGAACCAGGACCTGCTGTCTTTCTACGCCGTGGTCATGGGGCTGGACAACGCCGCTGTCAGCCGCCTTC
GACTCACCTGGGAGAAGCTGCCAGGGAAATTCAAGAACTTGTTTCGCAAATTTGAGAACCTGACGGACCC
CTGCAGGAACCACAAAAGCTACCGAGAAGTGATCTCCAAAATGAAGCCCCCTGTGATTCCCTTCGTGCCT
CTGATCCTCAAAGACCTGACTTTCCTGCACGAAGGGAGTAAGACCCTTGTAGATGGTTTGGTGAACATCG
AGAAGCTGCATTCAGTGGCCGAAAAAGTGAGGACAATCCGCAAATACCGGAGCCGGCCCCTTTGCCTGGA
CATGGAGGCATCCCCCAATCACCTGCAGACCAAGGCCTATGTGCGCCAGTTTCAGGTCATCGACAACCAG
AACCTCCTCTTCGAGCTCTCCTACAAGCTGGAGGCAAACAGTCAGTGA

Translation (505 aa):
MMLRPGYPLSQESFPIDILLDDIVLTHSLFLPTEKFLQELHQYFVRAGGMEGPEGLGRKQACLAMLLHFL
DTYQGLLQEEEGAGHIIKDLYLLIMKDESLYQGLREDTLRLHQLVETVELKIPEENQPPSKQVKPLFRHF
RRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAV
SSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPGDTEIHRVEPEDVANHLTAFHW
ELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPGKRAQLLKKFIKIAALCK
QNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKSYREVISKMKPPVIPFVP
LILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPNHLQTKAYVRQFQVIDNQ
NLLFELSYKLEANSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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