NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77565.1 Public Homo sapiens 20 SHLD1 24 110 108 CCDS HistoryNCBI Gene:149840Re-query CCDS DB by CCDS ID:77565.1Re-query CCDS DB by GeneID:149840See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77565.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378979.8 ENSP00000368263.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378979.8Link to Ensembl Protein Viewer:ENSP00000368263.4Re-query CCDS DB by Nucleotide ID:ENST00000378979Re-query CCDS DB by Protein ID:ENSP00000368263
Original member Current member NCBI NM_001303479.2 NP_001290408.1 Accepted alive Link to Nucleotide Sequence:NM_001303479.2Link to Protein Sequence:NP_001290408.1Re-query CCDS DB by Nucleotide ID:NM_001303479Re-query CCDS DB by Protein ID:NP_001290408Link to BLAST:NP_001290408.1

Chromosomal Locations for CCDS 77565.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 5772866 5773043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 5773132 5773142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (189 nt):
ATGGCAGCCAGGGACGCCACTTCAGGCAGCCTGTCAGAGGAGAGCAGTGCTTTGGACCTGCCATCAGCGT
GTGACATAAGAGATTACGTCCTGCAGGGACCCAGCCAAGAAGCCAACAGCGAGGCTTTCAGTTCTTTGGA
ATTCCATTCTTTTCCTTATTCTTCTGATGTGGATCCAGCAGATCTCTGA

Translation (62 aa):
MAARDATSGSLSEESSALDLPSACDIRDYVLQGPSQEANSEAFSSLEFHSFPYSSDVDPADL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH