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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS780.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
780.2 |
Public |
Homo sapiens |
1 |
COL11A1 |
24 |
110 |
108 |
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Public Note for CCDS 780.1 |
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data. |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 780.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENST00000512756.5 |
ENSP00000426533.1 |
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Accepted |
alive |
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NCBI |
NM_080630.4 |
NP_542197.3 |
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Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_542197.3 |
1690 |
P12107-4 |
1690 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 780.2
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5073 nt): ATGGAGCCGTGGTCCTCTAGGTGGAAAACGAAACGGTGGCTCTGGGATTTCACCGTAACAACCCTCGCAT TGACCTTCCTCTTCCAAGCTAGAGAGGTCAGAGGAGCTGCTCCAGTTGATGTACTAAAAGCACTAGATTT TCACAATTCTCCAGAGGGAATATCAAAAACAACGGGATTTTGCACAAACAGAAAGAATTCTAAAGGCTCA GATACTGCTTACAGAGTTTCAAAGCAAGCACAACTCAGTGCCCCAACAAAACAGTTATTTCCAGGTGGAA CTTTCCCAGAAGACTTTTCAATACTATTTACAGTAAAACCAAAAAAAGGAATTCAGTCTTTCCTTTTATC TATATATAATGAGCATGGTATTCAGCAAATTGGTGTTGAGGTTGGGAGATCACCTGTTTTTCTGTTTGAA GACCACACTGGAAAACCTGCCCCAGAAGACTATCCCCTCTTCAGAACTGTTAACATCGCTGACGGGAAGT GGCATCGGGTAGCAATCAGCGTGGAGAAGAAAACTGTGACAATGATTGTTGATTGTAAGAAGAAAACCAC GAAACCACTTGATAGAAGTGAGAGAGCAATTGTTGATACCAATGGAATCACGGTTTTTGGAACAAGGATT TTGGATGAAGAAGTTTTTGAGGGGGACATTCAGCAGTTTTTGATCACAGGTGATCCCAAGGCAGCATATG ACTACTGTGAGCATTATAGTCCAGACTGTGACTCTTCAGCACCCAAGGCTGCTCAAGCTCAGGAACCTCA GATAGATGAGTATGCACCAGAGGATATAATCGAATATGACTATGAGTATGGGGAAGCAGAGTATAAAGAG GCTGAAAGTGTAACAGAGGGACCCACTGTAACTGAGGAGACAATAGCACAGACGGAGATAAATGGCCATG GTGCATATGGAGAGAAAGGACAGAAAGGAGAACCAGCAGTGGTTGAGCCTGGTATGCTTGTCGAAGGACC ACCAGGACCAGCAGGACCTGCAGGTATTATGGGTCCTCCAGGTCTACAAGGCCCCACTGGACCCCCTGGT GACCCTGGCGATAGGGGCCCCCCAGGACGTCCTGGCTTACCAGGGGCTGATGGTCTACCTGGTCCTCCTG GTACTATGTTGATGTTACCGTTCCGTTATGGTGGTGATGGTTCCAAAGGACCAACCATCTCTGCTCAGGA AGCTCAGGCTCAAGCTATTCTTCAGCAGGCTCGGATTGCTCTGAGAGGCCCACCTGGCCCAATGGGTCTA ACTGGAAGACCAGGTCCTGTGGGGGGGCCTGGTTCATCTGGGGCCAAAGGTGAGAGTGGTGATCCAGGTC CTCAGGGCCCTCGAGGCGTCCAGGGTCCCCCTGGTCCAACGGGAAAACCTGGAAAAAGGGGTCGTCCAGG TGCAGATGGAGGAAGAGGAATGCCAGGAGAACCTGGGGCAAAGGGAGATCGAGGGTTTGATGGACTTCCG GGTCTGCCAGGTGACAAAGGTCACAGGGGTGAACGAGGTCCTCAAGGTCCTCCAGGTCCTCCTGGTGATG ATGGAATGAGGGGAGAAGATGGAGAAATTGGACCAAGAGGTCTTCCAGGTGAAGCTGGCCCACGAGGTTT GCTGGGTCCAAGGGGAACTCCAGGAGCTCCAGGGCAGCCTGGTATGGCAGGTGTAGATGGCCCCCCAGGA CCAAAAGGGAACATGGGTCCCCAAGGGGAGCCTGGGCCTCCAGGTCAACAAGGGAATCCAGGACCTCAGG GTCTTCCTGGTCCACAAGGTCCAATTGGTCCTCCTGGTGAAAAAGGACCACAAGGAAAACCAGGACTTGC TGGACTTCCTGGTGCTGATGGGCCTCCTGGTCATCCTGGGAAAGAAGGCCAGTCTGGAGAAAAGGGGGCT CTGGGTCCCCCTGGTCCACAAGGTCCTATTGGATACCCGGGCCCCCGGGGAGTAAAGGGAGCAGATGGTG TCAGAGGTCTCAAGGGATCTAAAGGTGAAAAGGGTGAAGATGGTTTTCCAGGATTCAAAGGTGACATGGG TCTAAAAGGTGACAGAGGAGAAGTTGGTCAAATTGGCCCAAGAGGGGAAGATGGCCCTGAAGGACCCAAA GGTCGAGCAGGCCCAACTGGAGACCCAGGTCCTTCAGGTCAAGCAGGAGAAAAGGGAAAACTTGGAGTTC CAGGATTACCAGGATATCCAGGAAGACAAGGTCCAAAGGGTTCCACTGGATTCCCTGGGTTTCCAGGTGC CAATGGAGAGAAAGGTGCACGGGGAGTAGCTGGCAAACCAGGCCCTCGGGGTCAGCGTGGTCCAACGGGT CCTCGAGGTTCAAGAGGTGCAAGAGGTCCCACTGGGAAACCTGGGCCAAAGGGCACTTCAGGTGGCGATG GCCCTCCTGGCCCTCCAGGTGAAAGAGGTCCTCAAGGACCTCAGGGTCCAGTTGGATTCCCTGGACCAAA AGGCCCTCCTGGACCACCTGGGAAGGATGGGCTGCCAGGACACCCTGGGCAACGTGGGGAGACTGGATTT CAAGGCAAGACCGGCCCTCCTGGGCCAGGGGGAGTGGTTGGACCACAGGGACCAACCGGTGAGACTGGTC CAATAGGGGAACGTGGGCATCCTGGCCCTCCTGGCCCTCCTGGTGAGCAAGGTCTTCCTGGTGCTGCAGG AAAAGAAGGTGCAAAGGGTGATCCAGGTCCTCAAGGTATCTCAGGGAAAGATGGACCAGCAGGATTACGT GGTTTCCCAGGGGAAAGAGGTCTTCCTGGAGCTCAGGGTGCACCTGGACTGAAAGGAGGGGAAGGTCCCC AGGGCCCACCAGGTCCAGTTGGCTCACCAGGAGAACGTGGGTCAGCAGGTACAGCTGGCCCAATTGGTTT ACCAGGGCGCCCGGGACCTCAGGGTCCTCCTGGTCCAGCTGGAGAGAAAGGTGCTCCTGGAGAAAAAGGT CCCCAAGGGCCTGCAGGGAGAGATGGAGTTCAAGGTCCTGTTGGTCTCCCAGGGCCAGCTGGTCCTGCCG GCTCCCCTGGGGAAGACGGAGACAAGGGTGAAATTGGTGAGCCGGGACAAAAAGGCAGCAAGGGTGACAA GGGAGAAAATGGCCCTCCCGGTCCCCCAGGTCTTCAAGGACCAGTTGGTGCCCCTGGAATTGCTGGAGGT GATGGTGAACCAGGTCCTAGAGGACAGCAGGGGATGTTTGGGCAAAAAGGTGATGAGGGTGCCAGAGGCT TCCCTGGACCTCCTGGTCCAATAGGTCTTCAGGGTCTGCCAGGCCCACCTGGTGAAAAAGGTGAAAATGG GGATGTTGGTCCCATGGGGCCACCTGGTCCTCCAGGCCCAAGAGGCCCTCAAGGTCCCAATGGAGCTGAT GGACCACAAGGACCCCCAGGGTCTGTTGGTTCAGTTGGTGGTGTTGGAGAAAAGGGTGAACCTGGAGAAG CAGGGAACCCAGGGCCTCCTGGGGAAGCAGGTGTAGGCGGTCCCAAAGGAGAAAGAGGAGAGAAAGGGGA AGCTGGTCCACCTGGAGCTGCTGGACCTCCAGGTGCCAAGGGGCCACCAGGTGATGATGGCCCTAAGGGT AACCCGGGTCCTGTTGGTTTTCCTGGAGATCCTGGTCCTCCTGGGGAACCTGGCCCTGCAGGTCAAGATG GTGTTGGTGGTGACAAGGGTGAAGATGGAGATCCTGGTCAACCGGGTCCTCCTGGCCCATCTGGTGAGGC TGGCCCACCAGGTCCTCCTGGAAAACGAGGTCCTCCTGGAGCTGCAGGTGCAGAGGGAAGACAAGGTGAA AAAGGTGCTAAGGGGGAAGCAGGTGCAGAAGGTCCTCCTGGAAAAACCGGCCCAGTCGGTCCTCAGGGAC CTGCAGGAAAGCCTGGTCCAGAAGGTCTTCGGGGCATCCCTGGTCCTGTGGGAGAACAAGGTCTCCCTGG AGCTGCAGGCCAAGATGGACCACCTGGTCCTATGGGACCTCCTGGCTTACCTGGTCTCAAAGGTGACCCT GGCTCCAAGGGTGAAAAGGGACATCCTGGTTTAATTGGCCTGATTGGTCCTCCAGGAGAACAAGGGGAAA AAGGTGACCGAGGGCTCCCTGGAACTCAAGGATCTCCAGGAGCAAAAGGGGATGGGGGAATTCCTGGTCC TGCTGGTCCCTTAGGTCCACCTGGTCCTCCAGGTTTACCAGGTCCTCAAGGCCCAAAGGGTAACAAAGGC TCTACTGGACCCGCTGGCCAGAAAGGTGACAGTGGTCTTCCAGGGCCTCCTGGGTCTCCAGGTCCACCTG GTGAAGTCATTCAGCCTTTACCAATCTTGTCCTCCAAAAAAACGAGAAGACATACTGAAGGCATGCAAGC AGATGCAGATGATAATATTCTTGATTACTCGGATGGAATGGAAGAAATATTTGGTTCCCTCAATTCCCTG AAACAAGACATTGAGCATATGAAATTTCCAATGGGTACTCAGACCAATCCAGCCCGAACTTGTAAAGACC TGCAACTCAGCCATCCTGACTTCCCAGATGGTGAATATTGGATTGATCCTAACCAAGGTTGCTCAGGAGA TTCCTTCAAAGTTTACTGTAATTTCACATCTGGTGGTGAGACTTGCATTTATCCAGACAAAAAATCTGAG GGAGTAAGAATTTCATCATGGCCAAAGGAGAAACCAGGAAGTTGGTTTAGTGAATTTAAGAGGGGAAAAC TGCTTTCATACTTAGATGTTGAAGGAAATTCCATCAATATGGTGCAAATGACATTCCTGAAACTTCTGAC TGCCTCTGCTCGGCAAAATTTCACCTACCACTGTCATCAGTCAGCAGCCTGGTATGATGTGTCATCAGGA AGTTATGACAAAGCACTTCGCTTCCTGGGATCAAATGATGAGGAGATGTCCTATGACAATAATCCTTTTA TCAAAACACTGTATGATGGTTGTGCGTCCAGAAAAGGCTATGAAAAGACTGTCATTGAAATCAATACACC AAAAATTGATCAAGTACCTATTGTTGATGTCATGATCAATGACTTTGGTGATCAGAATCAGAAGTTCGGA TTTGAAGTTGGTCCTGTTTGTTTTCTTGGCTAA
Translation (1690 aa): MEPWSSRWKTKRWLWDFTVTTLALTFLFQAREVRGAAPVDVLKALDFHNSPEGISKTTGFCTNRKNSKGS DTAYRVSKQAQLSAPTKQLFPGGTFPEDFSILFTVKPKKGIQSFLLSIYNEHGIQQIGVEVGRSPVFLFE DHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTVTMIVDCKKKTTKPLDRSERAIVDTNGITVFGTRI LDEEVFEGDIQQFLITGDPKAAYDYCEHYSPDCDSSAPKAAQAQEPQIDEYAPEDIIEYDYEYGEAEYKE AESVTEGPTVTEETIAQTEINGHGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPG DPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGFDGLP GLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPG PKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGA LGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEGPK GRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG PRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGF QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLR GFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG PQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGG DGEPGPRGQQGMFGQKGDEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGAD GPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKG NPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGE KGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDP GSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKG STGPAGQKGDSGLPGPPGSPGPPGEVIQPLPILSSKKTRRHTEGMQADADDNILDYSDGMEEIFGSLNSL KQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSE GVRISSWPKEKPGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYHCHQSAAWYDVSSG SYDKALRFLGSNDEEMSYDNNPFIKTLYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFG FEVGPVCFLG
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