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Report for CCDS7809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7809.1 Public Homo sapiens 11 MICAL2 24 110 108 CCDS HistoryNCBI Gene:9645Re-query CCDS DB by CCDS ID:7809.1Re-query CCDS DB by GeneID:9645See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256194.8 ENSP00000256194.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000256194.8Link to Ensembl Protein Viewer:ENSP00000256194.4Re-query CCDS DB by Nucleotide ID:ENST00000256194Re-query CCDS DB by Protein ID:ENSP00000256194
Original member Current member EBI ENST00000683283.1 ENSP00000507067.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683283.1Link to Ensembl Protein Viewer:ENSP00000507067.1Re-query CCDS DB by Nucleotide ID:ENST00000683283Re-query CCDS DB by Protein ID:ENSP00000507067
Original member Current member NCBI NM_001282663.2 NP_001269592.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001282663.2Link to Protein Sequence:NP_001269592.1Re-query CCDS DB by Nucleotide ID:NM_001282663Re-query CCDS DB by Protein ID:NP_001269592Link to BLAST:NP_001269592.1
Original member Current member NCBI NM_001346292.2 NP_001333221.1 Accepted alive Link to Nucleotide Sequence:NM_001346292.2Link to Protein Sequence:NP_001333221.1Re-query CCDS DB by Nucleotide ID:NM_001346292Re-query CCDS DB by Protein ID:NP_001333221Link to BLAST:NP_001333221.1
Original member Current member NCBI NM_014632.4 NP_055447.1 Accepted alive Link to Nucleotide Sequence:NM_014632.4Link to Protein Sequence:NP_055447.1Re-query CCDS DB by Nucleotide ID:NM_014632Re-query CCDS DB by Protein ID:NP_055447Link to BLAST:NP_055447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269592.1 1124 O94851-1 1124 100% 0 0
NP_001333221.1 1124 O94851-1 1124 100% 0 0
NP_055447.1 1124 O94851-1 1124 100% 0 0

Chromosomal Locations for CCDS 7809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 12162156 12162419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12204250 12204457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12208023 12208139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12209497 12209598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12213255 12213410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12216219 12216319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12220201 12220458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12221644 12221759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12222617 12222743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12223411 12223501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12224673 12224820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12226171 12226370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12227025 12227131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12236177 12236245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12239436 12239585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12241040 12241162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12242214 12242432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12242671 12242772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12243987 12244112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12249184 12249246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12255643 12255750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12256785 12256971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12258468 12258556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12259795 12259897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 12262480 12262520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3375 nt):
ATGGGGGAAAACGAGGATGAGAAGCAGGCCCAGGCGGGGCAGGTTTTTGAGAACTTTGTCCAGGCATCCA
CGTGCAAAGGTACCCTCCAGGCCTTCAACATTCTCACACGACACCTGGACCTAGACCCTCTGGACCACAG
AAACTTTTATTCCAAGCTCAAGTCCAAGGTGACCACCTGGAAAGCCAAAGCCCTGTGGTACAAATTGGAT
AAGCGTGGTTCCCACAAAGAGTATAAGCGAGGGAAGTCGTGCACGAACACCAAGTGTCTCATAGTTGGGG
GAGGACCCTGTGGCTTGCGCACTGCCATTGAACTTGCCTACCTGGGAGCCAAAGTGGTCGTGGTGGAGAA
GAGGGACTCCTTCTCCCGGAACAACGTGCTACACCTCTGGCCTTTCACCATCCATGACCTTCGTGGCCTG
GGAGCCAAGAAGTTCTATGGGAAGTTCTGTGCTGGCTCCATCGACCATATCAGTATTCGCCAACTACAGC
TCATCCTATTCAAGGTGGCCCTGATGCTGGGAGTTGAAATCCATGTGAATGTGGAGTTCGTGAAGGTTCT
AGAGCCTCCTGAAGATCAAGAAAATCAAAAAATTGGCTGGCGGGCAGAATTTCTCCCTACAGACCATTCT
CTGTCGGAGTTTGAGTTTGACGTCATCATTGGTGCCGATGGCCGCAGGAACACCCTGGAAGGGTTCAGAA
GAAAAGAATTCCGTGGGAAGCTGGCGATTGCCATCACCGCCAACTTCATAAACAGAAACAGCACAGCGGA
AGCCAAGGTGGAAGAGATTAGTGGTGTGGCTTTCATCTTCAATCAGAAATTTTTTCAGGACCTTAAAGAA
GAAACAGGCATAGATCTTGAGAACATTGTTTACTACAAGGACTGCACCCACTATTTTGTAATGACAGCCA
AGAAGCAGAGCCTGCTCGACAAAGGTGTCATCATTAACGACTACATCGACACAGAGATGCTGCTGTGTGC
GGAGAACGTGAACCAAGACAACCTGCTATCCTATGCCCGGGAAGCTGCAGACTTTGCCACCAACTACCAG
CTGCCATCCTTAGACTTTGCCATGAACCACTATGGGCAGCCTGATGTGGCCATGTTTGACTTTACCTGCA
TGTATGCCTCAGAGAACGCGGCCCTGGTGCGGGAGCGGCAGGCGCACCAGCTGCTCGTGGCCCTTGTGGG
TGACAGCTTGCTTGAGCCATTTTGGCCCATGGGTACAGGCTGTGCCCGTGGCTTCCTGGCAGCCTTTGAC
ACGGCATGGATGGTGAAGAGCTGGAACCAGGGCACCCCTCCCCTGGAGCTGCTGGCTGAAAGGGAAAGTC
TCTACCGGCTGTTACCTCAGACAACCCCGGAGAACATCAACAAGAACTTTGAGCAGTACACGTTGGACCC
AGGGACACGGTACCCAAACCTCAACTCACACTGTGTCAGGCCCCATCAGGTGAAGCATTTGTATATCACT
AAGGAGCTGGAGCACTACCCTCTCGAGAGACTGGGCTCGGTGAGGAGATCTGTCAACCTCTCCAGGAAGG
AGTCAGATATCCGGCCCAGCAAGCTCCTGACCTGGTGCCAGCAGCAGACAGAGGGCTACCAGCATGTCAA
CGTCACCGACCTGACCACATCCTGGCGCAGTGGGTTGGCCCTGTGTGCCATCATCCACCGCTTCCGGCCT
GAGCTCATCAACTTTGACTCTTTGAATGAAGATGATGCTGTGGAGAACAACCAGCTCGCATTTGATGTGG
CCGAGCGAGAGTTTGGGATCCCTCCAGTGACCACGGGCAAAGAGATGGCATCTGCCCAGGAGCCTGACAA
GCTCAGCATGGTCATGTACCTCTCCAAGTTCTACGAGCTCTTCCGGGGCACCCCACTGAGGCCCGTGGAT
TCTTGGCGCAAAAACTATGGAGAAAATGCTGACCTCAGCTTGGCCAAATCATCCATTTCTAATAACTATC
TCAACCTCACATTTCCAAGGAAGAGGACTCCACGGGTGGATGGTCAAACCGGAGAGAATGACATGAACAA
ACGGAGACGGAAGGGCTTCACCAACCTGGACGAGCCTTCAAACTTTTCCAGCCGTAGCTTGGGCTCCAAT
CAAGAGTGTGGGAGCAGTAAGGAAGGTGGAAATCAGAACAAAGTCAAGTCCATGGCGAATCAGCTGCTGG
CCAAGTTTGAGGAGAGCACTCGGAACCCCTCACTCATGAAGCAGGAACGCCGTGTCTCAGGGATAGGTAA
GCCGGTCCTGTGCTCTTCCTCCGGCCCTCCTGTTCACTCTTGCTGCCCCAAGCCGGAGGAGGCCACACCC
AGCCCATCACCTCCTCTGAAAAGGCAGTTCCCCTCTGTGGTCGTGACGGGGCACGTGCTCAGAGAGCTCA
AGCAAGTGTCTGCTGGCAGTGAGTGCCTGAGCAGACCTTGGAGAGCCAGAGCCAAGTCTGACCTACAGCT
GGGTGGGACAGAAAATTTCGCTACCCTGCCTTCTACCCGCCCGAGGGCGCAGGCTCTTTCCGGGGTGCTG
TGGCGGCTGCAGCAAGTGGAGGAAAAGATTCTCCAGAAGAGGGCTCAGAACTTGGCCAACAGGGAATTTC
ACACAAAGAACATTAAGGAGAAGGCGGCTCACCTTGCCTCCATGTTTGGACACGGGGATTTCCCGCAGAA
TAAACTACTCTCTAAAGGCCTGTCTCATACTCATCCTCCATCTCCTCCCTCTCGCCTTCCGTCTCCTGAT
CCAGCTGCTTCTTCCTCTCCATCAACTGTTGACTCTGCTTCTCCTGCCAGAAAGGAAAAGAAGTCACCTT
CAGGGTTCCATTTTCATCCCAGCCATTTGAGAACAGTGCATCCTCAGCTGACGGTAGGGAAAGTGTCCAG
CGGAATAGGGGCTGCAGCTGAAGTCCTGGTCAATCTGTACATGAATGATCACAGACCTAAGGCCCAGGCC
ACCTCTCCAGACCTGGAATCTATGCGAAAGTCATTTCCCCTTAACCTGGGAGGCAGCGACACGTGTTACT
TCTGTAAGAAACGTGTGTACGTGATGGAACGGCTGAGCGCCGAGGGCCACTTCTTCCACCGGGAGTGTTT
CCGCTGCAGCATCTGTGCCACCACCTTGCGCCTGGCCGCCTACACCTTTGACTGCGATGAAGGCAAATTT
TACTGCAAGCCTCACTTCATTCACTGTAAAACCAATAGCAAACAACGGAAGAGACGGGCAGAGTTGAAGC
AACAAAGAGAGGAGGAGGCAACATGGCAAGAGCAGGAAGCCCCTCGGAGAGACACTCCCACCGAAAGTTC
TTGCGCAGTGGCCGCCATTGGCACCCTGGAAGGCAGCCCCCCAGTTCATTTCAGCCTTCCAGTGCTACAC
CCACTTCTTGGCTGA

Translation (1124 aa):
MGENEDEKQAQAGQVFENFVQASTCKGTLQAFNILTRHLDLDPLDHRNFYSKLKSKVTTWKAKALWYKLD
KRGSHKEYKRGKSCTNTKCLIVGGGPCGLRTAIELAYLGAKVVVVEKRDSFSRNNVLHLWPFTIHDLRGL
GAKKFYGKFCAGSIDHISIRQLQLILFKVALMLGVEIHVNVEFVKVLEPPEDQENQKIGWRAEFLPTDHS
LSEFEFDVIIGADGRRNTLEGFRRKEFRGKLAIAITANFINRNSTAEAKVEEISGVAFIFNQKFFQDLKE
ETGIDLENIVYYKDCTHYFVMTAKKQSLLDKGVIINDYIDTEMLLCAENVNQDNLLSYAREAADFATNYQ
LPSLDFAMNHYGQPDVAMFDFTCMYASENAALVRERQAHQLLVALVGDSLLEPFWPMGTGCARGFLAAFD
TAWMVKSWNQGTPPLELLAERESLYRLLPQTTPENINKNFEQYTLDPGTRYPNLNSHCVRPHQVKHLYIT
KELEHYPLERLGSVRRSVNLSRKESDIRPSKLLTWCQQQTEGYQHVNVTDLTTSWRSGLALCAIIHRFRP
ELINFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELFRGTPLRPVD
SWRKNYGENADLSLAKSSISNNYLNLTFPRKRTPRVDGQTGENDMNKRRRKGFTNLDEPSNFSSRSLGSN
QECGSSKEGGNQNKVKSMANQLLAKFEESTRNPSLMKQERRVSGIGKPVLCSSSGPPVHSCCPKPEEATP
SPSPPLKRQFPSVVVTGHVLRELKQVSAGSECLSRPWRARAKSDLQLGGTENFATLPSTRPRAQALSGVL
WRLQQVEEKILQKRAQNLANREFHTKNIKEKAAHLASMFGHGDFPQNKLLSKGLSHTHPPSPPSRLPSPD
PAASSSPSTVDSASPARKEKKSPSGFHFHPSHLRTVHPQLTVGKVSSGIGAAAEVLVNLYMNDHRPKAQA
TSPDLESMRKSFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGKF
YCKPHFIHCKTNSKQRKRRAELKQQREEEATWQEQEAPRRDTPTESSCAVAAIGTLEGSPPVHFSLPVLH
PLLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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