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Report for CCDS78344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78344.1 Public Homo sapiens 8 CSPP1 24 110 108 CCDS HistoryNCBI Gene:79848Re-query CCDS DB by CCDS ID:78344.1Re-query CCDS DB by GeneID:79848See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000519668.1 ENSP00000430092.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000519668.1Link to Ensembl Protein Viewer:ENSP00000430092.1Re-query CCDS DB by Nucleotide ID:ENST00000519668Re-query CCDS DB by Protein ID:ENSP00000430092
Original member Current member NCBI NM_001291339.2 NP_001278268.1 Accepted alive Link to Nucleotide Sequence:NM_001291339.2Link to Protein Sequence:NP_001278268.1Re-query CCDS DB by Nucleotide ID:NM_001291339Re-query CCDS DB by Protein ID:NP_001278268Link to BLAST:NP_001278268.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001278268.1 876 Q1MSJ5-2 876 100% 0 0

Chromosomal Locations for CCDS 78344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 67095665 67095732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67103037 67103135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67105905 67105975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67111972 67112065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67113805 67113862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67115914 67116122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67118248 67118369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67118743 67118821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67131951 67132080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67137456 67137603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67154024 67154136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67158447 67158596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67158991 67159137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67161811 67161915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67163732 67163798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67164391 67164508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67172416 67172555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67175296 67175436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67177680 67177726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67179863 67179926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67190650 67190759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67193464 67193602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 67195382 67195593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGGATGAGAGGTTTAGATATGAAAGTGATTTTGATAGAAGACTTTCGAGAGTGTATACAAATGACAGGA
TGCACAGGAACAAACGAGGGAATATGCCTCCTATGGAACATGATGGGGATGTTATAGAACAGTCAAACAT
AAGAATTTCATCTGCTGAAAATAAAAGTGCTCCAGACAATGAAACATCCAAATCTGCTAATCAAGATACC
TGTAGTCCTTTTGCAGGGATGCTCTTTGGAGGTGAAGATCGAGAACTTATTCAGAGAAGGAAAGAGAAAT
ACAGACTAGAACTGTTGGAACAAATGGCTGAGCAACAGAGGAACAAGAGACGAGAAAAAGATTTAGAACT
CAGGGTTGCAGCGTCTGGAGCACAAGACCCTGAGAAATCGCCTGATAGACTAAAGCAGTTTAGTGTGGCA
CCAAGACACTTTGAAGAGATGATACCACCTGAAAGACCCAGAATAGCTTTCCAGACACCTCTCCCTCCTT
TATCTGCCCCATCTGTCCCACCCATCCCATCAGTTCATCCTGTTCCTTCTCAAAATGAAGATTTGCGCAG
TGGACTCAGCAGCGCCCTTGGTGAAATGGTGTCTCCCAGGATTGCACCTCTGCCTCCACCTCCCCTACTA
CCACCTTTGGCTACTAACTATCGAACTCCTTATGATGATGCATACTATTTTTATGGGTCCAGGAATACTT
TCGATCCCAGTCTTGCTTATTATGGTTCAGGAATGATGGGCGTACAGCCTGCAGCTTATGTTAGTGCTCC
TGTCACCCACCAACTAGCACAACCTGTTGTGAATACGGTTGGACAGAATGAACTGAAGATTACAAGTGAT
CAAGTGATAAATTCAGGATTGATTTTTGAAGATAAACCGAAACCTTCCAAACAGTCACTTCAGTCTTACC
AAGAGGCTTTGCAGCAGCAGATTCGGGAAAGAGAAGAAAGAAGGAAGAAAGAACGTGAAGAAAAAGAAGA
ATATGAAGCTAAATTAGAAGCTGAAATGAGAACATATAATCCCTGGGGAAAAGGTGGAGGTGGTGCTCCT
CTCAGGGATGCAAAAGGAAATCTGATAAGTCATATGCAAACACAGAGCTCTCCTTTTGCTCGGGGAAATG
TATTTGGTGAGCCTCCAACTGAACTTCAGATTAAACAGCAAGAATTATACAAGAATTTTCTTCGTTTCCA
GATTGAGGAAAAGAAACAAAGAGAGGAAGCAGAGCGAGAGAGACTGAGAATTGCAGAAGAAAAAGAAGAA
AGACGGCTTGCAGAACAGAGGGCACGAATTCAGCAGGAGTATGAAGAGGAACAGGAAAAGAAAAGAGAGA
AAGAGGAGGAGCAAAGGCTAAAAAATGAAGAGCATATTCGGTTAGCTGAAGAAAGACAAAAAGAAGCAGA
AAGAAAGAAGAAAGAAGAAGAAGAAAAATATAACCTGCAACTTCAGCACTACTGTGAAAGAGACAATTTG
ATTGGGGAAGAAACAAAGCACATGAGACAGCCTTCTCCTATAGTTCCTGCTCTTCAGAACAAAATTGCAA
GCAAACTCCAAAGACCTCCTTCAGTTGACAGCATCATACGTTCCTTTATTCATGAAAGTTCCATGTCCAG
GGCACAGTCACCCCCGGTACCTGCCAGGAAAAATCAGCTCCGTGCAGAAGAGGAGAAAAAAAATGTAATT
ATGGAATTATCAGAAATGAGAAAACAGCTTCGTAGTGAAGAGAGGCGTCTACAAGAGCGATTGCTACACA
TGGACAGTGATGATGAAATTCCTATCAGGAAAAAGGAAAGGAATCCCATGGATATATTTGATATGGCTAG
ACATCGGTTGCAAGCTCCTGTCAGAAGACAGTCCCCTAAGGGCTTAGACGCTGCCACTTTTCAGAATGTT
CATGATTTTAATGAGCTGAAAGATAGAGATTCAGAAACACGAGTTGATCTGAAATTTATGTACCTGGATC
CTCCAAGAGATCATCACACCTTAGAGATTCAGCAGCAAGCCCTGCTAAGAGAGCAGCAGAAGAGGCTGAA
CAGAATAAAAATGCAGGAAGGTGCCAAAGTTGACTTAGATGCCATCCCAAGTGCTAAAGTACGAGAGCAA
AGAATGCCCAGAGATGACACTAGTGATTTCTTGAAAAACTCATTATTGGAATCTGATAGTGCTTTTATTG
GGGCTTACGGTGAGACATATCCTGCCATTGAAGATGACGTCCTCCCTCCACCATCACAGTTGCCCTCTGC
ACGGGAGCGCAGGAGGAACAAATGGAAAGGACTAGACATTGATAGCAGTCGTCCTAATGTAGCACCAGAT
GGTCTCTCTCTAAAATCTATATCCAGTGTAAATGTTGATGAGCTTAGAGTGAGAAATGAGGAACGAATGC
GAAGACTGAATGAATTTCACAATAAACCTATTAATACAGATGATGAGAGTTCACTGGTTGACCCTGATGA
CATCATGAAACACATAGGGGATGACGGATCAAACTCTGTAGCAACTGAGCCCTGGCTCCGCCCTGGCACT
TCAGAAACGCTGAAACGTTTCATGGCAGAGCAGCTGAACCAGGAGCAGCAGCAGATTCCTGGAAAACCAG
GCACTTTCACTTGGCAGGGCCTGTCGACTGCACATGGTTAA

Translation (876 aa):
MDERFRYESDFDRRLSRVYTNDRMHRNKRGNMPPMEHDGDVIEQSNIRISSAENKSAPDNETSKSANQDT
CSPFAGMLFGGEDRELIQRRKEKYRLELLEQMAEQQRNKRREKDLELRVAASGAQDPEKSPDRLKQFSVA
PRHFEEMIPPERPRIAFQTPLPPLSAPSVPPIPSVHPVPSQNEDLRSGLSSALGEMVSPRIAPLPPPPLL
PPLATNYRTPYDDAYYFYGSRNTFDPSLAYYGSGMMGVQPAAYVSAPVTHQLAQPVVNTVGQNELKITSD
QVINSGLIFEDKPKPSKQSLQSYQEALQQQIREREERRKKEREEKEEYEAKLEAEMRTYNPWGKGGGGAP
LRDAKGNLISHMQTQSSPFARGNVFGEPPTELQIKQQELYKNFLRFQIEEKKQREEAERERLRIAEEKEE
RRLAEQRARIQQEYEEEQEKKREKEEEQRLKNEEHIRLAEERQKEAERKKKEEEEKYNLQLQHYCERDNL
IGEETKHMRQPSPIVPALQNKIASKLQRPPSVDSIIRSFIHESSMSRAQSPPVPARKNQLRAEEEKKNVI
MELSEMRKQLRSEERRLQERLLHMDSDDEIPIRKKERNPMDIFDMARHRLQAPVRRQSPKGLDAATFQNV
HDFNELKDRDSETRVDLKFMYLDPPRDHHTLEIQQQALLREQQKRLNRIKMQEGAKVDLDAIPSAKVREQ
RMPRDDTSDFLKNSLLESDSAFIGAYGETYPAIEDDVLPPPSQLPSARERRRNKWKGLDIDSSRPNVAPD
GLSLKSISSVNVDELRVRNEERMRRLNEFHNKPINTDDESSLVDPDDIMKHIGDDGSNSVATEPWLRPGT
SETLKRFMAEQLNQEQQQIPGKPGTFTWQGLSTAHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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