NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS78374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78374.1 Public Homo sapiens 8 ARHGAP39 24 110 108 CCDS HistoryNCBI Gene:80728Re-query CCDS DB by CCDS ID:78374.1Re-query CCDS DB by GeneID:80728See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276826.5 ENSP00000276826.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276826.5Link to Ensembl Protein Viewer:ENSP00000276826.5Re-query CCDS DB by Nucleotide ID:ENST00000276826Re-query CCDS DB by Protein ID:ENSP00000276826
Original member Current member NCBI NM_001308207.1 NP_001295136.1 Accepted alive Link to Nucleotide Sequence:NM_001308207.1Link to Protein Sequence:NP_001295136.1Re-query CCDS DB by Nucleotide ID:NM_001308207Re-query CCDS DB by Protein ID:NP_001295136Link to BLAST:NP_001295136.1
Original member Current member NCBI NM_001308208.2 NP_001295137.1 Accepted alive Link to Nucleotide Sequence:NM_001308208.2Link to Protein Sequence:NP_001295137.1Re-query CCDS DB by Nucleotide ID:NM_001308208Re-query CCDS DB by Protein ID:NP_001295137Link to BLAST:NP_001295137.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295136.1 1083 Q9C0H5-1 1083 100% 0 0
NP_001295137.1 1083 Q9C0H5-1 1083 100% 0 0

Chromosomal Locations for CCDS 78374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144530422 144530616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144530702 144530871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144532305 144532396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144533126 144533325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144534129 144534202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144545249 144545810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144547127 144548489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144555560 144555643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144580846 144581277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144605535 144605614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3252 nt):
ATGTCCCAGACGCAGGACTACGAGTGCAGGAGCCATAATGTCGACCTGCCGGAGTCGAGGATTCCAGGGT
CG
AACACTCGGTTGGAGTGGGTGGAGATCATCGAACCGCGCACCCGCGAGCGCATGTACGCCAACCTGGT
C
ACCGGTGAGTGCGTGTGGGACCCGCCGGCCGGCGTCCGCATCAAGCGCACCAGCGAGAACCAGTGGTGG
GAG
CTGTTCGACCCCAACACGTCCCGCTTCTACTACTACAATGCCAGCACGCAGCGCACGGTGTGGCACC
GG
CCGCAGGGCTGCGACATCATCCCGCTGGCCAAGCTGCAGACGCTGAAGCAGAACACGGAGTCCCCGCG
C
GCCTCGGCGGAGAGCAGCCCCGGGCGCGGCAGCAGCGTCAGCCGTGAGGGCAGCACCAGCTCCTCCCTG
GAG
CCCGAGCCCGACACTGAGAAAGCGCAGGAGTTGCCAGCGAGGGCCGGGCGGCCCGCGGCGTTTGGGA
CA
GTGAAGGAGGACAGCGGCAGCTCTTCACCACCAGGAGTGTTCCTTGAGAAGGACTATGAGATTTACCG
G
GATTACAGTGCGGACGGCCAGCTTCTTCACTACAGGACCTCCTCGCTGCGGTGGAACTCGGGCGCCAAA
GAG
CGCATGCTCATCAAGGTCGCTGATCGGGAGCCCAGCTTCCTCGCCGCCCAGGGCAATGGCTACGCCC
CA
GACGGCCCACCTGGGGTCCGCTCCCGCAGACCCTCCGGCAGCCAGCACTCACCCAGCCTGCAGACCTT
C
GCCCCGGAGGCTGACGGCACCATCTTCTTCCCAGAGAGGAGGCCGTCACCCTTCCTGAAGAGGGCCGAG
CTC
CCAGGGAGCAGCTCCCCGCTGCTGGCCCAGCCCCGAAAGCCCTCCGGGGACTCGCAGCCCTCCTCCC
CG
CGCTATGGCTATGAACCCCCGCTCTACGAGGAGCCCCCAGTGGAGTACCAGGCCCCCATCTACGATGA
G
CCCCCCATGGACGTGCAATTCGAGGCTGGCGGGGGCTACCAGGCCGGCTCTCCCCAGCGGTCGCCGGGC
CGT
AAGCCCCGGCCGTTCCTCCAGCCCAACAAGCAGGGCCCCCCCTCGCCCTGCCAGCAGCTGGTGCTCA
CC
AAGCAGAAGTGTCCCGAGCGCTTCCTGAGCCTGGAGTACAGTCCCGCCGGCAAGGAGTACGTGCGGCA
G
CTGGTCTACGTGGAGCAGGCGGGCTCCAGCCCCAAGCTGCGCGCCGGCCCGCGGCACAAGTACGCGCCC
AAC
CCCGGCGGTGGTTCGTACTCCTTGCAGCCCAGCCCCTGCCTGCTGAGGGACCAGCGCCTGGGCGTCA
AG
TCCGGAGACTACAGCACCATGGAGGGACCTGAGCTGCGGCACAGCCAGCCGCCCACGCCGCTGCCACA
G
GCCCAGGAGGATGCCATGTCCTGGTCCAGCCAGCAGGACACCCTGTCCTCCACAGGCTACTCCCCGGGC
ACG
CGCAAGCGGAAGAGCAGAAAGCCCTCTTTGTGCCAAGCCACCAGCGCCACCCCCACTGAGGGCCCCG
GG
GACCTGCTTGTGGAGCAGCCCCTGGCCGAGGAACAGCCCCCGTGCGGGACCAGCCTCGCCCCCGTGAA
G
CGAGCGGAAGGTGAGGCCGAAGGGGCGCGGGGCGCGGCCGAGCCCTTCCTGGCGCAGGCTCGGCTGGCC
TGG
GAGGCGCAGCAGGCCCACTTCCACATGAAGCAGAGGAGCAGCTGGGACTCCCAGCAGGACGGCTCTG
GC
TACGAGAGCGACGGCGCCCTGCCACTGCCCATGCCCGGGCCGGTGGTGCGGGCCTTCAGCGAGGACGA
G
GCGCTGGCCCAGCAGGAGAACAGGCACTGGAGGAGGGGCACCTTCGAGAAGCTAGGCTTCCCCCAGATC
CTG
CTGGAGAAGAGCGTCTCCGTGCAGACCAACCTGGCCTCACCAGAGCCCTACCTCCACCCCTCACAGT
CT
GAGGACCTCGCTGCCTGTGCCCAGTTCGAGAGCAGCCGGCAGAGCCGCAGCGGCGTTCCCAGCTCCAG
C
TGCGTCTTCCCCACTTTCACGCTGCGCAAGCCCTCCTCGGAGACGGACATCGAGAACTGGGCCTCCAAG
CAC
TTCAACAAGCACACGCAGGGCCTCTTCCGGCGGAAGGTGTCCATCGCCAACATGCTGGCCTGGAGCA
GC
GAGTCCATCAAGAAGCCCATGATCGTGACAAGCGACCGGCACGTGAAGAAGGAGGCCTGCGAGCTCTT
C
AAGCTGATCCAGATGTACATGGGTGACCGGCGGGCCAAGGCCGACCCACTGCACGTGGCCCTGGAGGTG
GCC
ACCAAGGGCTGGAGCGTGCAGGGCCTGCGGGACGAGCTCTACATCCAGCTGTGCCGGCAGACCACCG
AG
AACTTCCGCCTGGAGAGCCTGGCCCGCGGCTGGGAGCTCATGGCCATCTGCCTGGCCTTTTTCCCGCC
C
ACCCCCAAGTTCCACTCCTACCTGGAAGGCTACATCTACCGGCACATGGACCCCGTCAATGACACTAAA
G
GG
GTGGCGATAAGCACGTATGCCAAGTACTGTTACCACAAGCTACAGAAGGCAGCCCTGACCGGGGCCA
AG
AAGGGGCTGAAGAAGCCCAACGTGGAGGAGATCCGGCATGCCAAGAACGCCGTGTTCAGCCCGTCCAT
G
TTCGGCAGCGCACTGCAGGAGGTCATGGGCATGCAGAGAGAGCGCTACCCCGAGCGCCAGCTGCCCTGG
GTG
CAGACACGGCTCTCTGAGGAGGTGCTGGCGCTCAACGGTGACCAGACAGAGGGCATCTTCAGGGTCC
CT
GGGGACATTGACGAGGTGAATGCCCTGAAGCTGCAGGTGGACCAGTGGAAGGTGCCCACAGGCCTGGA
A
GACCCCCACGTCCCTGCGTCCCTGCTGAAGCTGTGGTACCGGGAGCTGGAGGAGCCCCTGATCCCGCAC
GAG
TTCTACGAGCAGTGCATCGCGCACTACGACAGCCCCGAGGCGGCGGTGGCCGTGGTGCACGCGCTGC
CC
CGCATCAACCGCATGGTGCTGTGCTACCTCATCCGCTTCCTGCAGGTCTTCGTGCAGCCGGCCAACGT
C
GCGGTCACCAAGATGGATGTCAGCAACCTGGCCATGGTGATGGCGCCCAACTGCTTGCGCTGCCAGTCC
GAC
GACCCGCGCGTCATCTTCGAGAACACCCGCAAGGAGATGTCCTTCCTGCGGGTGCTCATCCAGCACC
TG
GACACCAGCTTCATGGAGGGTGTGCTGTAG


Translation (1083 aa):
MSQTQDYECRSHNVDLPESRIPGSNTRLEWVEIIEPRTRERMYANLVTGECVWDPPAGVRIKRTSENQWW
E
LFDPNTSRFYYYNASTQRTVWHRPQGCDIIPLAKLQTLKQNTESPRASAESSPGRGSSVSREGSTSSSL
E
PEPDTEKAQELPARAGRPAAFGTVKEDSG
SSSPPGVFLEKDYEIYRDYSADGQLLHYRTSSLRWNSGAK
E
RMLIKVADREPSFLAAQGNGYAPDGPPGVRSRRPSGSQHSPSLQTFAPEADGTIFFPERRPSPFLKRAE
L
PGSSSPLLAQPRKPSGDSQPSSPRYGYEPPLYEEPPVEYQAPIYDEPPMDVQFEAGGGYQAGSPQRSPG
R
KPRPFLQPNKQGPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAP
N
PGGGSYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWSSQQDTLSSTGYSPG
T
RKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPCGTSLAPVKRAEGEAEGARGAAEPFLAQARLA
W
EAQQAHFHMKQRSSWDSQQDGSGYESDGALPLPMPGPVVRAFSEDEALAQQENRHWRRGTFEKLGFPQI
L
LEKSVSVQTNLASPEPYLHPSQ
SEDLAACAQFESSRQSRSGVPSSSCVFPTFTLRKPSSETDIENWASK
H
FNKHTQGLFRRKVSIANMLAWSSESIKKPMIVTSDRHVKKEACELFKLIQMYMGDRRAKADPLHVALEV
A
TKGWSVQGLRDELYIQLCRQTTENFRLESLARGWELMAICLAFFPPTPKFHSYLEGYIYRHMDPVNDTK

G
VAISTYAKYCYHKLQKAALTGAKKGLKKPNVEEIRHAKNAVFSPSMFGSALQEVMGMQRERYPERQLPW
V
QTRLSEEVLALNGDQTEGIF
RVPGDIDEVNALKLQVDQWKVPTGLEDPHVPASLLKLWYRELEEPLIPH
E
FYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQ
VFVQPANVAVTKMDVSNLAMVMAPNCLRCQS
D
DPRVIFENTRKEMSFLRVLIQHLDTSFMEGVL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser