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Report for CCDS78400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78400.1 Public Homo sapiens 9 SPATA31A3 24 110 108 CCDS HistoryNCBI Gene:727830Re-query CCDS DB by CCDS ID:78400.1Re-query CCDS DB by GeneID:727830See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 78400.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428649.5 ENSP00000485118.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000428649.5Link to Ensembl Protein Viewer:ENSP00000485118.1Re-query CCDS DB by Nucleotide ID:ENST00000428649Re-query CCDS DB by Protein ID:ENSP00000485118
Original member Current member NCBI NM_001083124.1 NP_001076593.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083124.1Link to Protein Sequence:NP_001076593.1Re-query CCDS DB by Nucleotide ID:NM_001083124Re-query CCDS DB by Protein ID:NP_001076593Link to BLAST:NP_001076593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076593.1 1347 Q5VYP0 1347 100% 0 0

Chromosomal Locations for CCDS 78400.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 66986454 66990189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66990445 66990505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66991074 66991131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 66992333 66992521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4044 nt):
ATGGAGAATCTTCCCTTTCCTTTAAAATTACTTAGTGCCTCATCGCTAAACGCCCCCAGTTCCACACCAT
GGGTGTTGGATATCTTCCTCACTTTGGTGTTTGCCCTGGGGTTCTTCTTCCTATTACTCCCCTACTTATC
TTACTTCCGTTGTGATGACCCACCCTCACCATCGCCTGGGAAGAGAAAGTGTCCAGTAGGGCGGAGGCGG
AGGCCCAGAGGCAGGATGAAAAACCACAGTCTGAGAGCTGGTAGAGAGTGCCGGAGAGGCCTGGAGGAGA
CTTCGGACCTGCTTTCACAACTGCAGAGCCTCCTGGGGCCACACCTTGACAAAGGTGACTTTGGTCAGCT
CTCCGGTCCAGACCCCCCAGGTGAGGTGGGCGAAAGAGCACCTGATGGAGCCTCCCAGTCCTCTCATGAG
CCTATGGAAGATGCTGCTCCCATTCTCTCCCTGTTAGCTTCCCCGGATCCTCAAGCCAAGCATCCTCAGG
ATCTGGCCTCCACCCCATCACCAGGCCCAATGACCACCTCAGTCTCCTCCCTAAGTGCCTCCCAGCCACC
AGAACCTTCCCTTCCCCTAGAACACCCCTCACCCGAGCCACCTGCACTTTTCCCTCACCCACCACACACC
CCTGATCCTCTGGCCTGCTCTCTGCCTCCTCCAAAAGGCTTCACTGCTCCTCCCCTGCGGGACTCCACAC
TGATAACTCCATCTCACTGTGACTCAGTGGCACTTCCACTGGGCACCGTCCCTCAAAGCTTGTCTCCACA
TGAGGATTTGGTGGCTTCTGTCCCAGCCATCTCAGGCCTTGGTGGCTCAAACAGTCATGTTTCTGCCTCC
TCCCGGTGGCAGGAGACTGCCAGAACCTCGTGCGCCTTTAACTCATCAGTCCAGCAAGATCATCTTTCCC
GCCACCCACCAGAGACCTGTCAGATGGAAGCTGGTAGCCTGTTTTTGCTCAGCTCTGATGGCCAGAATGT
CGTGGGGATACAAGTCACAGAAACAGCCAAGGTCAACATTTGGGAAGAAAAAGAAAATGTTGGATCATTT
ACAAATCGAATGACCCCAGAAAAGCACTTAAATTCTTTGCGGAATTTGGCTAAATCATTGGATGCTGAGC
AGGACACCACAAACCCAAAACCCTTCTGGAACATGGGAGAGAACTCGAAACAGCTGCCCGGACCTCAGAA
GCTCTCAGATCCTAGGCTCTGGCAGGAAAGTTTTTGGAAGAATTATAGCCAGCTTTTCTGGGGCCTCCCC
TCTCTGCACAGCGAGTCCCTGGTGGCTAACGCCTGGGTAACTGACAGGTCTTATACTTTACAGTCTCCTC
CTTTCTTGTTCAATGAAATGTCCAATGTCTGCCCAATTCAAAGGGAGACTACAATGTCCCCACTGCTTTT
CCAGGCCCAGCCCCTGTCCCATCTGGGGCCCGAGTGCCAACCCTTTATTTCATCCACACCCCAATTCCGG
CCCACACCTATGGCTCAGGCCGAGGCTCAGGCCCATCTTCAATCTTCTTTCCCAGTCCTATCTCCTGCTT
TTCCATCCCTGATTCAGAACACTGGAGTAGCTTGCCCTGCATCGCAGAATAAAGTGCAAGCTCTCTCCCT
ACCTGAAACTCAGCACCCTGAATGGCCTTTGTTGAGGAGACAACTAGAAGGTAGGTTGGCTTTACCCTCT
AGGGTCCAAAAATCTCAGGACGTCTTTAGTGTCTCCACTCCTAACCTTCCCCAGGAAAGTTTGACATCCA
TTCTGCCTGAGAACTTTCCAGTCAGTCCTGAACTCCGGAGACAACTGGAGCAACACATAAAAAAGTGGAT
CATCCAACACTGGGGCAACCTGGGAAGGATCCAAGAGTCTCTGGATCTGATGCAGCTTCAGGACGAATCA
CCAGGGACAAGTCAGGCCAAGGGCAAACCCAGTCCCTGGCAGTCCTCCATGTCCACAGGTGAAAGCAGCA
AGGAGGCACAGAAGGTGAAGTTCCAGCTAGAGAGGGACCCGTGCCCACATCTGGGGCAAATTCTGGGTGA
GACCCCACAAAATCTATCCAGGGATATGAAAAGCTTCCCACGGAAGGTTCTGGGGGTGACTTCTGAGGAG
TTGGAAAGGAACTTGAGGAAGCCCTTGAGGAGTGACTCGGGAAGTGATTTATTAAGATGCACAGAGAGGA
CTCATATAGAAAACATCCTGAAAGCCCACATGGGCAGGAACTTGGGCCAGACCAACGAGGGCTTGATCCC
CGTGCGTGTGCGTCGATCCTGGCTTGCTGTCAACCAGGCTCTTCCCGTGTCCAACACCCATGTGAAAACC
AGCAATCTAGCAGCCCCGAAAAGTGGGAAAGCCTGTGTGAACACAGCCCAGGTGCTTTCCTTCCTCGAGC
CGTGTACTCAGCAGGGGTTGGGAGCCCATATTGTGAGGTTTTGGGCCAAACACAGGTGGGGTCTACCCCT
CAGGGTCCTCAAGCCCATTCAGTGCTTTAAACTGGAAAAGGTTTCATCCTTGTCCCTTACACAGCTTGCT
GGTCCCTCCTCAGCCACCTGTGAATCTGGGGCTGGCTCAGAAGTTGAGGTGGACATGTTCCTTAGAAAGC
CACCAATGGCAAGTCTGAGAAAGCAGGTGCTGACCAAAGCATCTGATCACATGCCAGAGAGTCTTCTGGC
CTCCTCACCTGCATGGAAGCAGTTCCAGAGGGCACCGCGAGGAATCCCATCTTGGAATGATCATGAACCC
TTGAAGCCTCCTCCAGCTGGACAGGAGGGCAGGTGGCCATCTAAGCCCCTCACGTACAGCCTCACAGGCA
GCACCCAGCAGAGCAGGAGCTTAGGAGCCCAATCTTCAAAGGCTGGAGAGACAAGGGAGGCAGTGCCACA
ATGCAGAGTCCCCTTGGAAACCTGTATGCTGGCAAACCTCCAAGCCACAAGTGAGGATGTGCATGGTTTC
GAGGCTCCAGGGACCAGCAAAAGCTCTCTACACCCTAGAGTGTCTGTCTCCCAAGATCCAAGAAAGCTGT
GTCTTATGGAGGAGGTTGTTAGTGAATTTGAGCCTGGAATGGCCACAAAGTCAGAGACCCAGCCTCAAGT
TTGTGCCGCTGTTGTGCTCCTTCCAGATGGGCAAGCATCTGTTGTGCCCCACGCTTCAGAGAATTTGGTT
TCTCAAGTGCCCCAGGGCCATCTCCAGAGCATGCCTACTGGGAACATGCGGGCTTCCCAGGAGCTACATG
ACCTCATGGCAGCCAGAAGGAGCAAACTGGTGCACGAGGAGCCCAGAAAACCAAACTGTCAAGGCTCATG
CAAGAGCCAAAGGCCAATGTTTCCCCCTATTCACAAGAGTGAGAAGTTTAGGAAGCCCAACTTAGAAAAA
CATGAAGAAAGGCTTGAAGGATTGAGGACTCCTCAACTTACCCCAGTCAGGAAAACAGAAGACACCCATC
AGGATGAAGGCGTCCAGCTACTGCCATCAAAGAAACAGCCTCCTTCAGTAAGCCCCTTTGGAGAAAACAT
CAAGCAAATTTTTCAGTGGATTTTTTCAAAGAAAAAAAGCAAGCCAGCACCAGTCACTGCTGAGAGCCAA
AAAACAGTAAAAAACAGATCATGTGTGTACAGCAGCAGTGCTGAAGCTCAGGGTCTCATGACGGCAGTTG
GACAAATGCTGGACGAGAAAATGTCACTTTGCCATGCGCGCCATGCCTCGAAGGTAAATCAGCACAAACA
GAAGTTTCAAGCCCCAGTCTGTGGGTTTCCCTGCAACCACAGGCACCTCTTCTACTCAGAACACGGCAGA
ATACTGAGCTATGCAGCCAGCAGTCAACAAGCCACTCTCAAGAGCCAGGGTTGTCCCAACAGAGACAGAC
AAATCAGAAATCAACAGCCCTTGAAAAGTGTGCGGTGCAACAATGAGCAATGGGGCCTGCGACATCCCCA
AATCTTGCACCCCAAGAAAGCTGTATCCCCAGTCAGTCCCCCTCAGCACTGGCCGAAGACATCCGGTGCC
TCTAGCCACCATCACCACTGTCCAAGGCACTGTCTTCTTTGGGAAGGTATCTGA

Translation (1347 aa):
MENLPFPLKLLSASSLNAPSSTPWVLDIFLTLVFALGFFFLLLPYLSYFRCDDPPSPSPGKRKCPVGRRR
RPRGRMKNHSLRAGRECRRGLEETSDLLSQLQSLLGPHLDKGDFGQLSGPDPPGEVGERAPDGASQSSHE
PMEDAAPILSLLASPDPQAKHPQDLASTPSPGPMTTSVSSLSASQPPEPSLPLEHPSPEPPALFPHPPHT
PDPLACSLPPPKGFTAPPLRDSTLITPSHCDSVALPLGTVPQSLSPHEDLVASVPAISGLGGSNSHVSAS
SRWQETARTSCAFNSSVQQDHLSRHPPETCQMEAGSLFLLSSDGQNVVGIQVTETAKVNIWEEKENVGSF
TNRMTPEKHLNSLRNLAKSLDAEQDTTNPKPFWNMGENSKQLPGPQKLSDPRLWQESFWKNYSQLFWGLP
SLHSESLVANAWVTDRSYTLQSPPFLFNEMSNVCPIQRETTMSPLLFQAQPLSHLGPECQPFISSTPQFR
PTPMAQAEAQAHLQSSFPVLSPAFPSLIQNTGVACPASQNKVQALSLPETQHPEWPLLRRQLEGRLALPS
RVQKSQDVFSVSTPNLPQESLTSILPENFPVSPELRRQLEQHIKKWIIQHWGNLGRIQESLDLMQLQDES
PGTSQAKGKPSPWQSSMSTGESSKEAQKVKFQLERDPCPHLGQILGETPQNLSRDMKSFPRKVLGVTSEE
LERNLRKPLRSDSGSDLLRCTERTHIENILKAHMGRNLGQTNEGLIPVRVRRSWLAVNQALPVSNTHVKT
SNLAAPKSGKACVNTAQVLSFLEPCTQQGLGAHIVRFWAKHRWGLPLRVLKPIQCFKLEKVSSLSLTQLA
GPSSATCESGAGSEVEVDMFLRKPPMASLRKQVLTKASDHMPESLLASSPAWKQFQRAPRGIPSWNDHEP
LKPPPAGQEGRWPSKPLTYSLTGSTQQSRSLGAQSSKAGETREAVPQCRVPLETCMLANLQATSEDVHGF
EAPGTSKSSLHPRVSVSQDPRKLCLMEEVVSEFEPGMATKSETQPQVCAAVVLLPDGQASVVPHASENLV
SQVPQGHLQSMPTGNMRASQELHDLMAARRSKLVHEEPRKPNCQGSCKSQRPMFPPIHKSEKFRKPNLEK
HEERLEGLRTPQLTPVRKTEDTHQDEGVQLLPSKKQPPSVSPFGENIKQIFQWIFSKKKSKPAPVTAESQ
KTVKNRSCVYSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPVCGFPCNHRHLFYSEHGR
ILSYAASSQQATLKSQGCPNRDRQIRNQQPLKSVRCNNEQWGLRHPQILHPKKAVSPVSPPQHWPKTSGA
SSHHHHCPRHCLLWEGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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