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Report for CCDS78554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78554.1 Public Mus musculus 1 Kcnq5 23 108 98 CCDS HistoryNCBI Gene:226922Re-query CCDS DB by CCDS ID:78554.1Re-query CCDS DB by GeneID:226922See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173404.1 ENSMUSP00000134076.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173404.1Link to Ensembl Protein Viewer:ENSMUSP00000134076.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173404Re-query CCDS DB by Protein ID:ENSMUSP00000134076
Original member Current member NCBI NM_001310477.1 NP_001297406.1 Accepted alive Link to Nucleotide Sequence:NM_001310477.1Link to Protein Sequence:NP_001297406.1Re-query CCDS DB by Nucleotide ID:NM_001310477Re-query CCDS DB by Protein ID:NP_001297406Link to BLAST:NP_001297406.1

Chromosomal Locations for CCDS 78554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 21402163 21403125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21404932 21405058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21405793 21405924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21424049 21424157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21457404 21457624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21469470 21469564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21479374 21479469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21487223 21487333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21505300 21505425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21505684 21505859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21535061 21535187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21593524 21593614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 21961181 21961581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2775 nt):
ATGCCCCGCCACCACGCGGGAGGAGAGGAGGGCGGTGCCGCCGGGCTCTGGGTGAGGAGCGGCGCGGCGG
CGGCGGCAGGCGCGGGTGGGGGGCGCCCGGGCAGCGGCATGAAGGATGTGGAGTCCGGCCGCGGCAGGGT
GCTGCTGAACTCGGCGGCCGCCAGGGGCGACGGCCTGCTGTTGCTCGGCACCCGCGCGGCGGCGCTCGGC
GGAGGCGGCGGCGGCTTGAGAGAGAGCCGCCGGGGCAAGCAGGGGGCCCGAATGAGCCTGCTGGGGAAGC
CGCTCTCCTACACCAGCAGCCAGAGCTGTCGGCGCAACGTCAAGTACCGGCGGGTGCAGAACTATCTGTA
CAACGTGCTGGAGCGACCCCGCGGCTGGGCGTTCGTCTACCACGCGTTCGTTTTTCTCCTTGTGTTTGGT
TGCTTGATTTTGTCAGTGTTTTCTACCATCCCTGAGCATACAAAATTGGCTTCAAGTTGCCTCTTAATTC
TGGAGTTCGTGATGATCGTTGTCTTTGGCTTGGAGTTCATCATTCGAATCTGGTCTGCAGGTTGCTGTTG
TCGTTATAGAGGATGGCAAGGAAGACTGAGGTTTGCTCGAAAACCATTCTGTGTAATAGATACCATTGTT
CTCATCGCTTCAATAGCAGTTGTCTCTGCAAAAACTCAGGGTAATATTTTCGCCACGTCAGCGCTCAGAA
GTCTCCGGTTCCTACAGATCCTGCGTATGGTGCGCATGGACAGAAGGGGAGGGACCTGGAAGCTGCTCGG
CTCTGTGGTTTATGCTCACAGCAAGGAATTAATCACAGCCTGGTACATTGGATTTCTGGTTCTTATTTTT
TCATCCTTCCTTGTCTATCTTGTGGAAAAGGATGCCAATAAAGAGTTTTCGACATATGCGGATGCTCTCT
GGTGGGGCACAATCACACTGACAACCATTGGCTATGGAGACAAAACACCCCTAACGTGGCTGGGAAGACT
GCTCTCTGCAGGCTTCGCACTCCTTGGCATTTCTTTCTTTGCACTTCCTGCTGGCATTCTTGGCTCAGGT
TTTGCATTAAAAGTACAGGAGCAGCACCGCCAGAAGCATTTTGAGAAAAGAAGGAACCCAGCTGCCAACC
TCATCCAGTGTGTCTGGCGTAGTTATGCAGCTGATGAAAAATCTGTTTCCATTGCAACCTGGAAGCCACA
TCTGAAGGCCTTGCACACCTGCAGCCCTACCAATCAGAAGCTGAGCTTTAAGGAGCGAGTGCGCATGGCT
AGCCCAAGGGGCCAGAGCATTAAGAGCAGACAAGCATCAGTAGGTGACAGGAGATCCCCGAGCACTGACA
TCACTGCCGAGGGCAGCCCCACCAAAGTCCAGAAGAGTTGGAGCTTCAACGACCGAACCCGCTTCAGGCC
CTCACTACGGCTCAAGAGTTCCCAGCCAAAGCCAGTGATAGACGCCGACACAGCCCTTGGCATTGATGAT
GTGTATGATGAGAAAGGATGCCAGTGTGACGTCTCTGTGGAGGACCTCACCCCACCACTTAAAACCGTCA
TCCGAGCAATCAGAATTATGAAGTTTCATGTTGCAAAGCGGAAGTTTAAGGAAACATTACGCCCATATGA
TGTAAAAGATGTCATTGAACAATACTCTGCTGGTCACCTGGACATGCTTTGTAGAATAAAAAGCCTTCAG
ACACGCGTTGATCAAATTCTTGGAAAAGGACAAATGACGTCAGATAAGAAGAGCCGAGAGAAAATAACAG
CAGAACACGAGACAACAGATGACCCCAGCATGCTCGCCCGGGTTGTGAAGGTTGAGAAACAGGTCCAGTC
CATCGAATCCAAGCTGGACTGCCTGCTGGATATCTATCAACAGGTCCTCCGGAAAGGCTCTGCCTCCGCC
CTCACTCTGGCATCCTTTCAGATCCCGCCTTTTGAATGTGAACAGACCTCTGACTATCAAAGTCCTGTGG
ATAGCAAAGACCTGTCTGGCTCAGCACAAAACAGCGGCTGTTTAACGAGGTCAGCCAGTGCCAACATCTC
AAGAGGCCTGCAGTTCATCCTAACACCAAATGAGTTCAGTGCTCAGACTTTCTATGCGCTTAGCCCTACT
ATGCACAGCCAAGCTACCCAGGTACCCATGAGTCAAAATGACGGCTCCTCCGTGGTAGCCACCAATAACA
TTGCAAACCAAATAAGCGCCGCACCCAAGCCAGCAGCCCCAACAACTTTACAGATCCCTCCTCCTCTCTC
GGCCATCAAGCACTTGTCCAGGCCAGAACCTCTGCTCTCAAACCCCACCGGCTTACAAGAGAGTATTTCT
GATGTCACCACCTGCCTTGTTGCCTCCAAGGAAAGTGTTCAGTTTGCACAGTCAAACCTGACCAAGGACC
GTTCCCTGAGGAAAAGTTTCGACATGGGAGGAGAAACTCTGTTGTCTGTCCGCCCCATGGTGCCCAAGGA
TTTGGGCAAATCTCTGTCTGTACAAAACCTGATCAGGTCGACAGAAGAACTGAACTTACAGTTTTCAGGC
AGCGAGTCAAGCGGCTCTCGAGGCAGTCAAGATTTTTATCCCAAGTGGAGAGAATCCAAATTGTTTATAA
CTGATGAGGAGGTCGGTGCCGAAGAGACAGAAACAGATACTTTTGACGGCACCCCACCGCCTGCGGGGGA
GGCTGCTTTCTCATCAGACTCTCTAAGGACTGGAAGGTCACGGTCATCTCAGAACATTTGTAAGACAGGA
GACAGTACAGACGCCCTCAGTTTGCCTCACGTCAAACTGAACTAA

Translation (924 aa):
MPRHHAGGEEGGAAGLWVRSGAAAAAGAGGGRPGSGMKDVESGRGRVLLNSAAARGDGLLLLGTRAAALG
GGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVLERPRGWAFVYHAFVFLLVFG
CLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIV
LIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIF
SSFLVYLVEKDANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSG
FALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTNQKLSFKERVRMA
SPRGQSIKSRQASVGDRRSPSTDITAEGSPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTALGIDD
VYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQ
TRVDQILGKGQMTSDKKSREKITAEHETTDDPSMLARVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASA
LTLASFQIPPFECEQTSDYQSPVDSKDLSGSAQNSGCLTRSASANISRGLQFILTPNEFSAQTFYALSPT
MHSQATQVPMSQNDGSSVVATNNIANQISAAPKPAAPTTLQIPPPLSAIKHLSRPEPLLSNPTGLQESIS
DVTTCLVASKESVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKSLSVQNLIRSTEELNLQFSG
SESSGSRGSQDFYPKWRESKLFITDEEVGAEETETDTFDGTPPPAGEAAFSSDSLRTGRSRSSQNICKTG
DSTDALSLPHVKLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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