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Report for CCDS78678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78678.1 Public Mus musculus 1 Nucks1 23 108 98 CCDS HistoryNCBI Gene:98415Re-query CCDS DB by CCDS ID:78678.1Re-query CCDS DB by GeneID:98415See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000189946.6 ENSMUSP00000140818.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189946.6Link to Ensembl Protein Viewer:ENSMUSP00000140818.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189946Re-query CCDS DB by Protein ID:ENSMUSP00000140818
Original member Current member NCBI NM_001145804.1 NP_001139276.1 Accepted alive Link to Nucleotide Sequence:NM_001145804.1Link to Protein Sequence:NP_001139276.1Re-query CCDS DB by Nucleotide ID:NM_001145804Re-query CCDS DB by Protein ID:NP_001139276Link to BLAST:NP_001139276.1

Chromosomal Locations for CCDS 78678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 131910734 131910750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131919005 131919054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131921943 131922048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131924586 131924641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131928064 131928216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131929616 131929762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 131931034 131931206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGTCTCGGCCTGTCAGAAATAGGAAGGTTGTGGATTACTCTCAGTTTCAGGAATCAGATGATGCAGATG
AAGATTATGGAAGAGATTCAGGCCCTCCTGCTAAGAAGATTCGGTCATCTCCCCGAGAGGCTAAAAATAA
GAGGCGATCTGGAAAAAATTCACAAGAAGACAGTGAAGACTCAGAAGAAAAAGATGTGAAGACCAAGAAG
GATGATTCTCACTCGGCAGAAGACAGCGAAGATGAAAAAGATGATCATAAAAATGTACGCCAGCAACGAC
AGGCAGCATCTAAAGCAGCTTCTAAGCAGAGAGAGATGCTCTTGGAAGATGTTGGCAGCGAGGAAGAGCC
GGAAGAAGATGATGAGGCGCCATTCCAGGAGAATTCTGGCAGCGATGAAGATTTCCTAATGGAAGACGAC
GATGATAGTGATTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCCAAACCTGAGAGAA
AAGAAAAGAAAATGCCCAAACCCAGACTAAAGGCAACAGTGACGCCAAGTCCAGTGAAAGGCAAAGCGAA
AGTGGGTCGCCCCACAGCTTCGAAGAAATCAAAGGAAAAAACTCCTTCTCCCAAAGAAGAGGATGAGGAA
GCAGAAAGCCCTCCAGAAAAGAAGTCCGGAGACGAAGGGTCCGAGGATGAAGCCTCATCTGGGGAAGATT
AA

Translation (233 aa):
MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPAKKIRSSPREAKNKRRSGKNSQEDSEDSEEKDVKTKK
DDSHSAEDSEDEKDDHKNVRQQRQAASKAASKQREMLLEDVGSEEEPEEDDEAPFQENSGSDEDFLMEDD
DDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTPSPVKGKAKVGRPTASKKSKEKTPSPKEEDEE
AESPPEKKSGDEGSEDEASSGED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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