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Report for CCDS78754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78754.1 Public Mus musculus 1 Ifi203 23 108 98 CCDS HistoryNCBI Gene:15950Re-query CCDS DB by CCDS ID:78754.1Re-query CCDS DB by GeneID:15950See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000129829.7 ENSMUSP00000122424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129829.7Link to Ensembl Protein Viewer:ENSMUSP00000122424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129829Re-query CCDS DB by Protein ID:ENSMUSP00000122424
Original member Current member NCBI NM_001302649.1 NP_001289578.1 Accepted alive Link to Nucleotide Sequence:NM_001302649.1Link to Protein Sequence:NP_001289578.1Re-query CCDS DB by Nucleotide ID:NM_001302649Re-query CCDS DB by Protein ID:NP_001289578Link to BLAST:NP_001289578.1

Chromosomal Locations for CCDS 78754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 173922536 173922604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173923949 173924137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173926806 173927222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173928275 173929516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173933783 173933926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173935010 173935177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173936518 173936639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 173937742 173938006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGATGGCTGAATACAAGAATATTGTTCTTCTAAAAGGATTAGAGAACATGGAGGACTATCAGTTTAGGA
CAGTCAAGTCCTTACTAAGAAAAGAACTAAAACTTACTAAAAAAATGCAAGAAGATTATGATAGGATTCA
GCTGGCGGACTGGATTGAGGACAAGTTCCCCAAAGATGCTGGACTAGACAAACTGATAAAAGTGTGTGAG
CACATAAAAGATCTTAAAGACCTTGCTAAAAAACTTAAAACAGAGAAGGCAAAAGTTCAAAAGAAAAAGG
AAGGAAAATGCAAAACGGCTGGGAAAAAAAAAGGGCAAGATGAACTCAGTTCTTCTGAATCTCTTTTCAA
CAATAAAGAATCAAACAAGAGTGTACCGTCTTCAAAGAAAAAGAGAAAACAGATCACAAAAACTGAAGGT
GGAAAGAAAAAGAAGCTCACCCAGGAGCAGGCTCAGCTTCCAGAAACTTCAGGAACCAACATAAAAAAAG
AGGAAGATTGCCTCCAGAATCCTCATAAGTCTCCACCAACACCATCCAGCAGTTCCTCAAACAAGAAGAA
TCCTGTTGTGGCGTCCTTCTTGCTGGCAAGTCGGGCGTCTACAAGTGGTGCCAAAACCCGGGAACAAGAT
ATCTTAAGGCACAAACAAAGACCCTCAAGAAAGGGAGGATTCAAAACTACATTTTGTGAGAGAATTAAGA
AACAGAAAAACAGAACCATCCGAAAACATAGTATCTCAAAGACAGAGGGTCCTCAGGAAAAGCAACAACG
TGTAGAATTGTCATCAATCAGCAACTTCCAAGCTGTAAGCGAACTCCTGACCTTTGAAGGACTTTCAGCA
ATTCCTTCGAGCAGACTTCAGTCTTCTCAGAAGCCTCTAGAAGCTCACTTGGATTTAAAGATGTCTCCAA
TCTCTCCAACATCACCTTGCCACAATCTTCCAGTGTCTCTATCCTCAGACTCAAATGTTCATCTGAACTC
TAATGCACATTCCATCCTGTTCAGTGGTGCCCAGGTTCCTCATGTACCATCAGCAACAGGATTCAGTAAT
GTCGGGGTCCCTCTTATGCCTTCAGAAACAGTGTTCAGTTCTTCCAGTGCTCCTCAGATATCTCAAATAA
CAGTACCTAGCAGCATCCGGGACCTTTACCTTCCTAAACCAGCAGCATTCAATAGCACAGAGGCTCCTCA
CAAACAGGCAATAGCATCCAGAAATGGCCAAACTACTAGAGCGCCATCAGCAAAACTGACAAGCAAATCC
CAGTTCCTAAAGTTGCATCCTCCAGCAACAGCATCCAGCAATTCTCAGGTTCCTCATATTCTAGCAACCA
TGCCCAGAAACATCTCTGTCACACAGGTACCTCAAACAAGAACATCCAGTAGCATTCAGACTCTTAACTC
TGCTACAGTAAAAGCATCCAAGAATGTCCAGGCCCCTCAAGTATCTTTACCAATACGACCCAATTATTTT
CTGGCTTCTGTGGCACCTCCATCAGCAACACCCAACCGTCTTACATCTCATGGGCCACTTTTGTCAATAG
CCACAAGCAGAGCCCAGACTACTCAAATTGAACCAGGAACAGAATCCATTTGTGTCCAGGCTCTTCATGC
TCCTCCATCAACAGTGTCCAGAAATAAGTGCACCACTCCATTGACACAAGGGGCAGAATCCAGTACTGGG
GAAGCCCTTCCCCTTCCTAAAGTAAAAGCATGCACGATATTCCAAGCACCTCGGGTGTCTTCACCAACTG
CATCCAGCAGTATCATGAAGCCACATGCAACTTCATCAAAAACATCCAGCAGTCTCCTGGATCAACATGC
AACTTCATCAACAGCATCCAGCAGCCGTCTTCTGGCTCTAAAGTTGTCTCCAGTAACAGCATCTAGGGCT
CTCAGTGCTATTCCAGGGCTTTCAGAAACAATACACAGAAGTCCATCCAGCGCACCAAGGAGAGGAACTG
TACCAAAGGAGCCTTCTAGAGAAGAAGGTCACCATCAAGGTCCCAAACAAGTGATGGTGTTGAAAGTAAC
AGAACCATTTACATATGACTTTGAAGAAACGAAAAGGATGTTTCATGCTACAGTGGCTACTGAAACTGAG
TTCTTCAGAGTGAAGGTTTTTGACACAGCTCTAATGAGCAAGTTCATCCCAGGAAAGATCATTGCCATAT
CACATTATATTGGGTGCAATGGGTTTCTGGAGATATACAGAGCTTCCTGTGTGTCCGATGTGAACATTAA
CCCAACAATGATTATCTCAAATACACTGAGTGAAAGTGCTATTGCAACTCCAAAAATTTCTTATCTTCTC
TCACAAGCAAAGGGGACATTTGTAAATGGAGAATTTGTAGTATTTAAGAAAAGTGAGAGGCATGAGTGCA
TTTGCTATGGAATTGGAGATGATACAGGAAAAATGGCAGTGGTGGTTTATGGACGACTCACCAATGTCAG
GTGTGAACCAGGCAGTAAACTTAGACTTGTCTGCTTTGAATTGACTTCCACTAAAGATGTGTGCCTCCTG
AGGTCTGTAAGGCACAGTTACATGCAGGTCATCAATGAAGGAAAGCCACTCAACCCAGACTCAGTCAGGA
GAAACTCTCTGGAACCATACTTCTGA

Translation (871 aa):
MMAEYKNIVLLKGLENMEDYQFRTVKSLLRKELKLTKKMQEDYDRIQLADWIEDKFPKDAGLDKLIKVCE
HIKDLKDLAKKLKTEKAKVQKKKEGKCKTAGKKKGQDELSSSESLFNNKESNKSVPSSKKKRKQITKTEG
GKKKKLTQEQAQLPETSGTNIKKEEDCLQNPHKSPPTPSSSSSNKKNPVVASFLLASRASTSGAKTREQD
ILRHKQRPSRKGGFKTTFCERIKKQKNRTIRKHSISKTEGPQEKQQRVELSSISNFQAVSELLTFEGLSA
IPSSRLQSSQKPLEAHLDLKMSPISPTSPCHNLPVSLSSDSNVHLNSNAHSILFSGAQVPHVPSATGFSN
VGVPLMPSETVFSSSSAPQISQITVPSSIRDLYLPKPAAFNSTEAPHKQAIASRNGQTTRAPSAKLTSKS
QFLKLHPPATASSNSQVPHILATMPRNISVTQVPQTRTSSSIQTLNSATVKASKNVQAPQVSLPIRPNYF
LASVAPPSATPNRLTSHGPLLSIATSRAQTTQIEPGTESICVQALHAPPSTVSRNKCTTPLTQGAESSTG
EALPLPKVKACTIFQAPRVSSPTASSSIMKPHATSSKTSSSLLDQHATSSTASSSRLLALKLSPVTASRA
LSAIPGLSETIHRSPSSAPRRGTVPKEPSREEGHHQGPKQVMVLKVTEPFTYDFEETKRMFHATVATETE
FFRVKVFDTALMSKFIPGKIIAISHYIGCNGFLEIYRASCVSDVNINPTMIISNTLSESAIATPKISYLL
SQAKGTFVNGEFVVFKKSERHECICYGIGDDTGKMAVVVYGRLTNVRCEPGSKLRLVCFELTSTKDVCLL
RSVRHSYMQVINEGKPLNPDSVRRNSLEPYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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