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Report for CCDS78867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78867.1 Public Mus musculus 10 Celf5 23 108 98 CCDS HistoryNCBI Gene:319586Re-query CCDS DB by CCDS ID:78867.1Re-query CCDS DB by GeneID:319586See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78867.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119060.7 ENSMUSP00000113546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119060.7Link to Ensembl Protein Viewer:ENSMUSP00000113546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119060Re-query CCDS DB by Protein ID:ENSMUSP00000113546
Original member NCBI NM_001311127.1 NP_001298056.1 Updated not alive Link to Nucleotide Sequence:NM_001311127.1Link to Protein Sequence:NP_001298056.1Re-query CCDS DB by Nucleotide ID:NM_001311127Re-query CCDS DB by Protein ID:NP_001298056
Current member NCBI NM_001311127.2 NP_001298056.1 Accepted alive Link to Nucleotide Sequence:NM_001311127.2Link to Protein Sequence:NP_001298056.1Re-query CCDS DB by Nucleotide ID:NM_001311127Re-query CCDS DB by Protein ID:NP_001298056Link to BLAST:NP_001298056.1

Chromosomal Locations for CCDS 78867.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 81462326 81462341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81462669 81462771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81464340 81464420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81465967 81466029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81466925 81467071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81467156 81467297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81467985 81468131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81469444 81469523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81470629 81470757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 81471306 81471357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGGCGCGGCCGATCCAGGTGAAACCGGCAGACAGTGAAAGCCGTGGAGGTAGGGACCGGAAGCTGTTCG
TGGGTATGCTCAACAAGCAGCAGTCAGAGGAAGACGTGCTCAGGCTCTTCCAGCCCTTTGGCGTCATAGA
CGAGTGCACAGTGCTTCGAGGACCAGATGGCAGCAGCAAAGGCTGTGCCTTCGTGAAGTTTTCTTCCCAC
ACAGAGGCCCAGGCTGCCATCCATGCCTTGCATGGCAGCCAGACTATGCCGGGAGCGTCCTCCAGCCTGG
TGGTCAAGTTTGCCGACACGGATAAAGAGCGGACATTGCGGCGTATGCAGCAGATGGTTGGCCAGCTGGG
CATCCTGACGCCGTCCCTCACCCTGCCCTTCAGCCCCTACAGTGCCTACGCCCAGGCTCTCATGCAGCAA
CAGACAACAGTGTTGTCCACCTCTGGCAGCTACCTGAGCCCCGGTGTGGCCTTCCCTCCCTGCCATATCC
AGCAGATTGGTGCCGTCAGCCTTAACGGTCTGCCTGCCACGCCCATCGCTCCTGCCTCTGGGCTACACTC
ACCCCCACTGCTAGGCACTGCCGCTGTTCCCGGCCTGATGGCGCCCATTCCCAATGGCTTCCCCGGCGTC
CTGCCCTTTCCCGGGAGTCACCCTGCCCTGGAGACTGTGTATGCCAATGGCCTTGTGCCCTACCCAGCTC
AGAGCCCCACTGTGGCAGAGACCCTCCATCCTGCCTTCTCCGGAGTCCAGCAGTACACAGCCATGTATCC
CACCGCGGCCATCGCGCCCGTGGCACACAGCGTTCCGCAGCCTCCGCACCTCCTGCAGCAGCAGCGCGAA
GGAGTTTGGAGACACGGAGCTGACCCAGATGTTCCTCCCCTTCGGCAATATCATCTCCTCCAAGGTGTTT
ATGGATCGGGCTACCAACCAGAGCAAGTGTTTCGGATTCGTGAGCTTTGA

Translation (319 aa):
MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSH
TEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPSLTLPFSPYSAYAQALMQQ
QTTVLSTSGSYLSPGVAFPPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTAAVPGLMAPIPNGFPGV
LPFPGSHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAIAPVAHSVPQPPHLLQQQRE
GVWRHGADPDVPPLRQYHLLQGVYGSGYQPEQVFRIREL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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