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Report for CCDS79193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79193.1 Public Mus musculus 13 Spock1 23 108 98 CCDS HistoryNCBI Gene:20745Re-query CCDS DB by CCDS ID:79193.1Re-query CCDS DB by GeneID:20745See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187852.6 ENSMUSP00000141130.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187852.6Link to Ensembl Protein Viewer:ENSMUSP00000141130.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187852Re-query CCDS DB by Protein ID:ENSMUSP00000141130
Original member Current member NCBI NM_001166465.1 NP_001159937.1 Accepted alive Link to Nucleotide Sequence:NM_001166465.1Link to Protein Sequence:NP_001159937.1Re-query CCDS DB by Nucleotide ID:NM_001166465Re-query CCDS DB by Protein ID:NP_001159937Link to BLAST:NP_001159937.1

Chromosomal Locations for CCDS 79193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 57423090 57423193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57436110 57436172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57440321 57440542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57444307 57444423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57512692 57512806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57556680 57556806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57587619 57587733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57696110 57696155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 57907402 57907587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGCCAGCGATCGCGGTGCTCGCGGCGGCCGCCGCGGCGTGGTGCTTCCTCCAAGTGGACAGCCGGCACC
TGGACGCGCTGGCCGGTGGCGCGGCCCTCAACAACGCCAATTTCCTAGACAATGACCAGTGGCTGAGCAC
TGTCTCCCAGTATGACCGTGACAAGTACTGGAACCGCTTCCGAGATGATGACTATTTCAGAAACTGGAAT
CCCAACAAGCCCTTCGACCAAGCCCTGGACCCATCCAAGGACCCCTGCCTGAAGGTGAAATGCAGCCCGC
ACAAAGTATGTGTGACCCAGGACTACCAGACGGCTCTGTGTGTCAGCCGCAAGCACCTGTTGCCCAGGCA
GAAGAAGGGCAATGTGGCTCACAAACACTGGCTTGGACCTTCCAATCTGGTTAAGTGCAAGCCTTGCCCC
GTGGCGCAGTCAGCGATGGTCTGCGGCTCTGACGGCCACACGTACACGTCCAAGTGCAAGTTGGAATTCC
ACGCTTGTTCTACAGGCAAAAGCCTCAACTCCCTCTGTGATGGGCCCTGTCCGTGTCTGCCTGAGCCTGA
GCCACTGAAGCCCAAAGCAGAGAAGAGTGCCTGCACGGACAAGGAGCTGCGGAACCTCGCCTCCCGGCTG
AAGGACTGGTTCGGGGCTCTTCATGAGGACGCCAATAGAGTCATCAAGCCTACCAGCTCTGATCCAGCCC
AAGGCAGGTTTGACACCAGCATCTTACCCATTTGCAAGGACTCCTTGGGTTGGATGTTCAACAAGTTGGA
CATGAACTATGACCTGTTGCTGGACCACTCAGAGATCAATGCCATCTACCTAGACAAATATGAGCCCTGC
ATCAAGCCTCTCTTCAACTCGTGCGACTCCTTCAAGGACGGCAAACTCTCCAACAATGAGTGGTGTTACT
GCTTCCAGAAGCCAGCGGGTCTCCCTTGCCAGAATGAAATGAACAGAATTCAGAAGCTAAGCAAGGGGAA
AAGCCTACTGGGAACAACTTTGGAAAATGGGACCGTGCCCACACGGCTGAGTGTGCATCAATTTCTTCTC
TCTCTGTGGAGGAGTTCGTGGGTTCTTCCCATCCATCGTCAGTAA

Translation (364 aa):
MPAIAVLAAAAAAWCFLQVDSRHLDALAGGAALNNANFLDNDQWLSTVSQYDRDKYWNRFRDDDYFRNWN
PNKPFDQALDPSKDPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCP
VAQSAMVCGSDGHTYTSKCKLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSACTDKELRNLASRL
KDWFGALHEDANRVIKPTSSDPAQGRFDTSILPICKDSLGWMFNKLDMNYDLLLDHSEINAIYLDKYEPC
IKPLFNSCDSFKDGKLSNNEWCYCFQKPAGLPCQNEMNRIQKLSKGKSLLGTTLENGTVPTRLSVHQFLL
SLWRSSWVLPIHRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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