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Report for CCDS79203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79203.1 Public Mus musculus 13 Gm5141 23 108 98 CCDS HistoryNCBI Gene:380850Re-query CCDS DB by CCDS ID:79203.1Re-query CCDS DB by GeneID:380850See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000201047.3 ENSMUSP00000144368.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000201047.3Link to Ensembl Protein Viewer:ENSMUSP00000144368.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000201047Re-query CCDS DB by Protein ID:ENSMUSP00000144368
Original member Current member NCBI NM_001256065.1 NP_001242994.1 Accepted alive Link to Nucleotide Sequence:NM_001256065.1Link to Protein Sequence:NP_001242994.1Re-query CCDS DB by Nucleotide ID:NM_001256065Re-query CCDS DB by Protein ID:NP_001242994Link to BLAST:NP_001242994.1

Chromosomal Locations for CCDS 79203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 62773608 62775162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62776717 62776777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62776963 62777089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 62785681 62785683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGAATGCAGTGACTTATGAGGACGTGCATGTGAACTTCACTCAAGAGGAGTGGGCTCTGCTGGATCCTT
CTCAGAAGACACTCTACAAAGATGTCATGCTGGAGACCTACAGGAACCTCAGTGCTTTAGGCTTTAGTTG
GGAAGCCCAAAATATTGAAGAACATTGTCAAAGTTCTAGAAGACACAGAAGGTGTGAAAGGAGTCAGAGT
GCAGAGAAACCCTCTGAATATACTCAACATGGTAAAGCATTTGCTTTCCATGCTCACAGTCATGCCCAAA
GGCATGAAAGGATTCATACAGAAAAGATCCCCTCTGAAGTTATTCACTGCATCGAAGACTTTTTACCTTA
CACAAGTCTCCAAGTACATAAAAGAGCACAAACTGGCCAGAAACAGTATGAATATAAACAATGTGGTAAA
GGATTTGCATGTCCCAGTCTTCTTAAAAGGCATGAAAGAATTCATACTGTCGAGAAACCCTACAAATGTA
ATCAGTGTGATAAAGCCTTTTCCCTTAAATATAGTCTCCAAAGACATATAAGGACACATACTGGAGAAAA
ACCCTTCAAATGTAATCAGTGTGAAAAAGCCTTTTCACATCATTGTAATCTTCAAACTCATAGAAGAACA
CATACCAGAGAGAAACCCTTCAAATGTAATGAATGTGACAAAGCCTTTTCCCAATTTGGTAATCTCCAAA
ATCATAGAAGGACACATACTGGAGAGAAACCCTTCAAATGTAATGAATGTGACAAAGCCTTTTCAGAGAA
AGGTAGTCTCCAAAAACATATAAGTATACATACTGGAGAGAAACCCTACAAATGTAATCAGTGTGATAAA
GCCTTTTCCCATAAACAGAGTCTCCTAATACATATAAGGATACATACTGGAGAAAAACCCTACAAATGTA
ATCAGTGTGATAAAGCTTTTTCCCATAAACATATTCTCAAAAACCATATAAGGATACATAGTGGAGAAAA
ACCCTACAAATGTAATCTTTGTGATAAAGTCTTTTCACGACACTTTCACCTCCAAAATCATATAAGAACA
CATACTGGAGAAAAGCCTTACAGATGTAATCAATGTGATAAAGCCTTTTCACATCACAAAACTCTTCAAA
CTCATAGAAAAACACATACCGGAGAGAAACCCTTCAAATGTAATGAATGTGACAAAGCCTTTTCAGAGAA
AGGTAGTCTCCAATCACATATAAGGACACATACTGGAGAAAAACCCTACAAATGTAATCAATGTGATAAA
GCCTTTTCCCATAAACAGAATCTCCAAATACATATAAGGATACATACTGGAGAAAAACCCTACAAATGTA
ATCAATGTGATAAAGCCTTTTCCTATAAACAGAATCTCCAAATACATATAAGGATACATACTGGAGAAAA
ACCCTACAAATGTAATCAATGTGATAAAGCCTTTTTACACCAAGGTAATCTTCAAACTCATAGAAGAACA
CATACCAGAGACAAACCCTTCCAATGTAATCTTTGTGATAAAGTCTTTTCACGACACTTTCACCTCCAAA
ATCATATAAGAACACATACTAGAGAGAAGCCTTACAAATGTAATGAATGTGGTAAAGGCTTTTCACAACA
CAGTTCTCTTCAAACTCATAGAAGAACACATACCGGAGAGAAACCCTTCAAATGTAATCAGTGTGATAAA
GCCTTTTCCTGTAAACATCATCTCCAAACACATATAAGGATACATACTGTAGAAAAACCCTACTAA

Translation (581 aa):
MNAVTYEDVHVNFTQEEWALLDPSQKTLYKDVMLETYRNLSALGFSWEAQNIEEHCQSSRRHRRCERSQS
AEKPSEYTQHGKAFAFHAHSHAQRHERIHTEKIPSEVIHCIEDFLPYTSLQVHKRAQTGQKQYEYKQCGK
GFACPSLLKRHERIHTVEKPYKCNQCDKAFSLKYSLQRHIRTHTGEKPFKCNQCEKAFSHHCNLQTHRRT
HTREKPFKCNECDKAFSQFGNLQNHRRTHTGEKPFKCNECDKAFSEKGSLQKHISIHTGEKPYKCNQCDK
AFSHKQSLLIHIRIHTGEKPYKCNQCDKAFSHKHILKNHIRIHSGEKPYKCNLCDKVFSRHFHLQNHIRT
HTGEKPYRCNQCDKAFSHHKTLQTHRKTHTGEKPFKCNECDKAFSEKGSLQSHIRTHTGEKPYKCNQCDK
AFSHKQNLQIHIRIHTGEKPYKCNQCDKAFSYKQNLQIHIRIHTGEKPYKCNQCDKAFLHQGNLQTHRRT
HTRDKPFQCNLCDKVFSRHFHLQNHIRTHTREKPYKCNECGKGFSQHSSLQTHRRTHTGEKPFKCNQCDK
AFSCKHHLQTHIRIHTVEKPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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