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Report for CCDS79301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79301.1 Public Mus musculus 14 Samd4 23 108 98 CCDS HistoryNCBI Gene:74480Re-query CCDS DB by CCDS ID:79301.1Re-query CCDS DB by GeneID:74480See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79301.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000125688.1 ENSMUSP00000115569.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125688.1Link to Ensembl Protein Viewer:ENSMUSP00000115569.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125688Re-query CCDS DB by Protein ID:ENSMUSP00000115569
Original member Current member NCBI NM_001310544.1 NP_001297473.1 Accepted alive Link to Nucleotide Sequence:NM_001310544.1Link to Protein Sequence:NP_001297473.1Re-query CCDS DB by Nucleotide ID:NM_001310544Re-query CCDS DB by Protein ID:NP_001297473Link to BLAST:NP_001297473.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297473.1 302 Q8CBY1-4 302 100% 0 0

Chromosomal Locations for CCDS 79301.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 47073887 47074148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47077507 47077592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47083497 47083615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47087759 47087960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47089044 47089170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47096091 47096174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 47101431 47101459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGATCCTGACACCCATCAAGGCCTACAGCTCTCCCAGTACCACCCCTGAGGTGCGCTGCCGGGAGCCCT
CACTGATGGAGAGCCCAAGCCCTGACTGCAAAGACAGCGCTGCAGCAGTCACCAGCGCCACAGCCAGTGC
CTCAGCCGGTGCCAGCGGTGGACTGCAACCACCCCAGCTGAGCAGCTGCGACGGAGAGCTGGCTGTCGCC
CCTCTGCCGGAGGGGGACCTCCCGGGGCAGTTCACCCGAGTCATGGGGAAAGTGTGCACACAGCTCTTGG
TCTCCAGACCCGATGAAGAAAATATAAGCTCCTATCTACAGCTCTTAGACAAGTGTCTTGTTCATGAGGC
ATTTACAGAGACACAGAAAAAAAGATTGTTGTCATGGAAACAGCAGGTGCAGAAGCTCTTTCGGTCTTTC
CCTCGGAAAACCCTTCTAGACATATCAGGATATCGACAGCAAAGAAATCGTGGCTTTGGGCAGTCCAACT
CCCTCCCAACAGCCAGCTCTGTGGGCAGCGGCATGGGCAGACGGAACCCACGACAGTACCAGATCGCATC
TCGGAATGTCCCTTCCGCCCGCCTTGGTCTCCTGGGCACCAGTGGATTTGTCAGCTCCAACCAGCGCCAC
ACCGCTGCCAACCCCACCATCATGAAACAAGGAAGACAGAACCTCTGGTTTGCCAACCCTGGGGGCAGCA
ACAGCATGCCCAGCCGCACCCACAGCTCCGTCCAGAAGACCCGCTCGCTGCCCGTGCATACTTCCCCACA
AAACATGCTGATGTTCCAGCAACCAGAATTTCAGCTTCCTGTGACTGAACCTGACATCAACAATAGGCTG
GAGTCCTTGTGCCTCAGTATGACGGAGCATGCCCTGGGAGACGGGGTTGACCGGACCTCCACAATCTAG

Translation (302 aa):
MILTPIKAYSSPSTTPEVRCREPSLMESPSPDCKDSAAAVTSATASASAGASGGLQPPQLSSCDGELAVA
PLPEGDLPGQFTRVMGKVCTQLLVSRPDEENISSYLQLLDKCLVHEAFTETQKKRLLSWKQQVQKLFRSF
PRKTLLDISGYRQQRNRGFGQSNSLPTASSVGSGMGRRNPRQYQIASRNVPSARLGLLGTSGFVSSNQRH
TAANPTIMKQGRQNLWFANPGGSNSMPSRTHSSVQKTRSLPVHTSPQNMLMFQQPEFQLPVTEPDINNRL
ESLCLSMTEHALGDGVDRTSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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